Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq87 87.8 2e-11 >seq87 Length=987056 Score = 87.8 bits (96), Expect = 2e-11 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167 || |||||||| || ||||| | ||||| || |||| | ||||| ||| ||| Sbjct 447082 AAACGCACCGATGATATCTCCTCCTGGGATGCAGACTTTTTGAAAGTCGATCAGGGCACA 447141 Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || |||||||| || | ||||| || || | || || || ||| | ||| | Sbjct 447142 CTATTTGAGTTAATTTTAGCCGCAAATTATTTGGATATTAAAGGACTGTTAGATGTAACC 447201 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 || || |||||||||| |||||||| || || | ||||| ||||||||||| || || Sbjct 447202 TGTAAAACTGTGGCCAATATGATCAAAGGTAAAACACCCGAAGAGATCCGCAAAACATTC 447261 Query 1592288 AACATCAA 1592295 || ||||| Sbjct 447262 AATATCAA 447269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106681935586324