Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_021861.1 Length=30910 Score E Sequences producing significant alignments: (Bits) Value seq884 132 1e-26 seq641 132 1e-26 seq1321 105 1e-18 >seq884 Length=19560 Score = 132 bits (146), Expect = 1e-26 Identities = 139/183 (76%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 5092 AATGGAGAACGTGAAACAGATTTTATTAACTGTGTTATCTGGCGACAACAAGCTGAAAAT 5151 || || ||||| ||| | |||||||| |||||||| || ||||| | | ||||||| Sbjct 919 AACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACA 978 Query 5152 ATGGCAAATTTCACACATAAAGGAAGCTTGATTGGTATCACTGGTAGAATCCAAACTCGA 5211 ||||| |||| || | |||||||| || | || | ||| ||||| |||||||| Sbjct 979 ATGGCTAATTATACTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGT 1038 Query 5212 AACTATGAAAATCAACAAGGACAACGTGTTTACGTTACTGAAGTTGTTGCAGATAGTTTC 5271 || ||||| || |||||||| |||||||| || || |||||||||||| || |||||| Sbjct 1039 AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTC 1098 Query 5272 CAA 5274 ||| Sbjct 1099 CAA 1101 >seq641 Length=27874 Score = 132 bits (146), Expect = 1e-26 Identities = 139/183 (76%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 5092 AATGGAGAACGTGAAACAGATTTTATTAACTGTGTTATCTGGCGACAACAAGCTGAAAAT 5151 || || ||||| ||| | |||||||| |||||||| || ||||| | | ||||||| Sbjct 26956 AACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACA 26897 Query 5152 ATGGCAAATTTCACACATAAAGGAAGCTTGATTGGTATCACTGGTAGAATCCAAACTCGA 5211 ||||| |||| || | |||||||| || | || | ||| ||||| |||||||| Sbjct 26896 ATGGCTAATTATACTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGT 26837 Query 5212 AACTATGAAAATCAACAAGGACAACGTGTTTACGTTACTGAAGTTGTTGCAGATAGTTTC 5271 || ||||| || |||||||| |||||||| || || |||||||||||| || |||||| Sbjct 26836 AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTC 26777 Query 5272 CAA 5274 ||| Sbjct 26776 CAA 26774 >seq1321 Length=4872 Score = 105 bits (116), Expect = 1e-18 Identities = 230/337 (68%), Gaps = 22/337 (7%) Strand=Plus/Plus Query 29874 TGGATTGCGGCATATCCAAATAATGAAGTAACACCAGTTCCAAACTATAGCT-TTTTCCC 29932 ||||| || | ||||||| || ||||||| ||||| |||||| || | | |||||| Sbjct 2398 TGGATGGCAGAATATCCAGATTATGAAGTGACACCTTATCCAAATTACAATTATTTTCCT 2457 Query 29933 AAGTATGGACGGAATTTCAGTATTC--CAGTTCACATCAACTTATGTTGCTGGCGGACTT 29990 | || | ||| || ||||| |||||||| ||||| || ||||| || || || Sbjct 2458 TCATTTGAA---AATATCGGTATTTTTCAGTTCACGTCAACCTACGTTGCAGGAGGGCTA 2514 Query 29991 GATGGAAATGTTGATTTAACAGGAATCACAGATAATGGATACGGAAAACAGCAAGGCCAA 30050 ||||| || |||||||||||||| || || |||||||| | | ||| ||| || Sbjct 2515 GATGGTAACGTTGATTTAACAGGTATTACTGATAATGGTT-----ATACA--AAG---AA 2564 Query 30051 GAAGTTAAACCCGATACTACTACACCAGCCATTGAAAATGGTAAAGAAG--CAAATGAAG 30108 || |||| | || | |||||||| ||||| || || ||| ||| | | Sbjct 2565 TAA--CCAACCAGCAACAAACACACCAGCAATTGATGCAGGGGAAAAAGTCGAAAATACG 2622 Query 30109 TTAAAGGAAACGATGTAGAAGTTGGAATGACGGTTAAAGTAAACTTTGGCGCTAAGAATT 30168 || | |||||| |||| || || |||||||| || ||| ||| | | || Sbjct 2623 CCAA--GTTCCGATGTTAAAGTCGGCGATACTGTTAAAGTGAAATTTAGCGTTGATGCTT 2680 Query 30169 ATGCCACAGGAGAAACAATTCCTCAATGGGTAAAAGG 30205 || ||||| ||| | ||||| |||||||||||||| Sbjct 2681 GGGCTACAGGTGAAGCTATTCCGCAATGGGTAAAAGG 2717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98783863286208