Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq71 352 3e-92 seq10 154 1e-32 seq48 131 2e-25 >seq71 Length=1348405 Score = 352 bits (390), Expect = 3e-92 Identities = 1161/1789 (65%), Gaps = 47/1789 (3%) Strand=Plus/Plus Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212 ||| || || || || | ||| |||| || ||||| ||||| | | |||||||| || Sbjct 494639 TTTGTCAACTGTGAATTGTATAGCATTTGCTGCTGGCTTCGTGCGTAAGTAATACATGCC 494698 Query 138213 CGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGG 138272 |||||| | || || ||| | || | |||||| || ||||| | || | || Sbjct 494699 CGTTTTGAGTCCTGCTTTCCAACCATAAAAGTGTATAGAGGTGAGCTTGCCATAGTTGGG 494758 Query 138273 TTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGC 138332 | |||| ||| || |||||||| || ||||||||||| ||||| ||||| || Sbjct 494759 CTCGGCCACGTGTATATTGAACGATTGGCTTTGATCGATGAATGCGCCACGATCTGCAGC 494818 Query 138333 CATGTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATATG 138392 ||| || || | |||| | |||||||| || |||||||| ||||| || ||||| Sbjct 494819 CATTTTGATGGAGGTTTTCACTGAAATCTCCCAAACAGTCTTGTACAGATCGCGTATATG 494878 Query 138393 TCGCGGTATTGTTGCAATATTTTGAAT-GCTCC-CGTTGGCCGCAATGATGCGATTTCTC 138450 | |||||| ||| |||| ||||| || | || || || | || ||| |||| || Sbjct 494879 TTTCGGTATGGTTTCAATGTTTTGTATAGAACCACGATG--TGTTATAATGGTATTTTTC 494936 Query 138451 ATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACC 138510 || ||||| | ||| | ||||| | | | ||| || || | || | || Sbjct 494937 ATATCATCATCCCACAAACCCAACTCGGTGAGATCGCGTAACAAGTGATGATTGACAACT 494996 Query 138511 TGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGAT 138570 || |||||||| | | || ||||| ||||| || ||| | || |||||||| Sbjct 494997 TGGAATTCACCCGAAAGCACACGACGTGTATAAATATTCGAAGTGTACGGTTCAAACGAC 495056 Query 138571 TCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAA 138630 || || || |||| ||| || || || | || || ||||| || | ||| | || Sbjct 495057 TCATTATTGCCCATAATTTGTGCGGTAGAAGCAGTTGGCATCGGTGCAAGCAACAATGAG 495116 Query 138631 TTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTA 138690 || |||| ||| || |||| ||| ||||| | | ||||| ||| | ||| | Sbjct 495117 TTGCGTACACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAGTTCCAGAGATCAGTT 495176 Query 138691 GGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTAC 138750 || |||| | |||||| || || |||| || ||| || | || ||||| || Sbjct 495177 GGCGTTTTATCCCACATGTCATATTGTAGTATACCCTTGCTGACTGGTGAACCTTCATAT 495236 Query 138751 GAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAA 138810 | ||||| ||| | | || ||||| || || || || | || ||||||||| Sbjct 495237 GTCTCGTAAGTGCCATATTTTTCAGCCAATTCACAACTGGCTTCCAATGCGCCATAGTAA 495296 Query 138811 ATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGG 138870 ||||||||| || || ||||| | ||| ||||| | || ||||| || | || Sbjct 495297 ATAGTTTCGAATATTTGTTGATTCAACAAGTATGCCTCATCACTTTCGTATGGAAAACGC 495356 Query 138871 AGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGA 138930 | | | || |||||||| | ||||| | ||| | || | || ||||| |||| | Sbjct 495357 ATTAAAATTAAGGCGTCGGCAAAACCTTGTATGCCAATACCAATGGGACGATGTCGCAAA 495416 Query 138931 TTTGACGCTTTTGCGGCTTCGATA--GGATAATAGTTTACATCGATGATTTTGTTTAAAT 138988 || || || | | || || || ||||||| || || || ||||||||||| |||| Sbjct 495417 TTCGA--TTTCTTGGCCTCCGGTAAGGGATAATGATTGACGTCTATGATTTTGTTCAAAT 495474 Query 138989 TTCGCACGACCACCTTAGTCGTATGCTTTAA-TCGTTCAAAATCGTATGTGCCCCCGTTG 139047 | ||| || | || || | | |||||| |||| ||| || || || || Sbjct 495475 TACGCGTAACAATTTTTGT-GACTTCTTTAAGCCGTTTAAAGTCATACGT------TTTA 495527 Query 139048 TCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACT 139107 || | || |||| | |||| | || ||||||| ||||| || || || Sbjct 495528 TC-----TGGTGT-GACATACATGTTCAATGCTATTGAGGCTAAATTGCAAACAGCTACC 495581 Query 139108 TCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCT 139167 |||||||| || ||||| |||||||||| ||||||||||||||| || ||||| || Sbjct 495582 TCGTCGGGTGCGGAATATTCAACAATTTCGGTACACAAATTACTACATTTAATCGTGCCA 495641 Query 139168 AAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCA 139227 | ||| || ||||| || |||| || ||||||||||| || | ||| ||||||||||| Sbjct 495642 ATATTCTGCTGATTACTCTTTCTATTGCAAGCATCTTTATACAACATGTACGGTGTGCCG 495701 Query 139228 GTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGT-ATTTGACGCAC 139286 || || || || | || |||||| ||| | || |||| ||| || | Sbjct 495702 GTCTCTACCTGCGATTCAATAATG---GCAAACCAAAGACT---TTGTGCTTTAACCTTC 495755 Query 139287 GTA-----AAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAG 139341 || | || | || | || || || || || | || ||||| |||||| | Sbjct 495756 TTATTAGCACGTCCTTCTTGTTCATATTTCTCATATAATTTCTCGAACTCTTCACCCCAT 495815 Query 139342 GCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTG 139401 | ||| | | | ||||||| | |||||||| |||||||| | | | || | | Sbjct 495816 ACTTCATGTAAACCCGGACACTTATGTGGACACATTAGCGACCAGTCTTCATCGGCTTCG 495875 Query 139402 ACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTA 139461 || || | ||| || |||||||| |||||||| || | | ||||| | || | Sbjct 495876 ACACGTCGCATAAATAGATCCGGTATCCACAAGGCATAGAATAAATCTCTTGCGCGATGC 495935 Query 139462 TCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGT 139521 ||||| || | || |||| | | || || |||||||| || ||||||||| Sbjct 495936 TCTTCTTTGCCAGTATTTTTCTTCAAATCCAAAAACTCGAAAACGTCCGCATGCCATGGT 495995 Query 139522 TCCAGATAGATGGCCATTGCGCCTTTCCGTTT---GCCACCTTGATCGACGTGTCGTACA 139578 |||||||||||||| | ||||| || || |||||||||||| || | ||| | Sbjct 495996 TCCAGATAGATGGCAAAGGCGCCGGGACGCTTACCGCCACCTTGATCAACATAACGTGCC 496055 Query 139579 GCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG 139638 ||||||| || || | || ||| ||| | | ||| | | || || || || | Sbjct 496056 ACATTATTAAACACTCTCAGCATTGGCACTAAACCATTGGAAGTGCCATTTGTACCCGCA 496115 Query 139639 ATGGGACTG--TTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATT 139696 || | | || || | || || | | ||| ||||| | || || ||||| || ||| Sbjct 496116 ATTGCAGTGCCTTTC--GCGCGTATGCAATGCACATTCAAACCAATACCGCCTGCAGATT 496173 Query 139697 TGGATATTAAAACGCAATCGCGT---AATGTCTCGTATATACCTCTTATGCTGTCGTCCT 139753 |||| || || | || | || |||| | | ||||| || |||||| Sbjct 496174 TGGAGATCAATGCACAGTGATGTGCCGATGT---GAAAATACCGTCAATTGAATCGTCCA 496230 Query 139754 GCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAG 139813 ||| || | ||||||||| || || | ||||||| | || ||| | || || || || | Sbjct 496231 CCATGGTAAGCAGAAAGCACGATGACAATTGCGGTTGCTTGGTGGCAGCAGCGAATAGCG 496290 Query 139814 TAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCA 139873 | || || || || || | | || | ||| | ||| ||||| || ||| Sbjct 496291 TTGGTGAGGCATGTGTAAAATAACGCTCAGAAAGCAAGTTGTATGTTTCAATTGCGGCAT 496350 Query 139874 CAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922 ||||||| || || ||||||| | || ||||| | ||| ||||| Sbjct 496351 CAATATCTTCACCATGTATACCGATGGCAACGCGCATTAACATGTGTTG 496399 >seq10 Length=3877145 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || |||||||||||||| | || || ||| | || Sbjct 2845274 ATGCAAATCTTCGTGAAGACCCTTACTGGTAAAACTATTACTTTGGAGGTCGAACCATCC 2845333 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||||| || || ||||| || || |||||| Sbjct 2845334 GACACCATCGAAAACGTTAAGGCTAAGATCCAAGATAAGGAGGGAATCCCACCAGATCAA 2845393 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||||||||| ||||| ||||||| | | |||| ||||| ||| Sbjct 2845394 CAACGTTTGATCTTTGCCGGTAAACAATTGGAGGACGGACGTACTTTGTCCGATTACAAC 2845453 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||||||||| || || || ||||| ||||| | || || ||| Sbjct 2845454 ATCCAAAAGGAATCAACCCTTCATTTGGTATTGCGTCTCCGTGGTGGC 2845501 Score = 138 bits (152), Expect = 1e-27 Identities = 164/217 (76%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| ||||||| | || || ||||| ||||| || || || ||| | | Sbjct 2844818 ATGCAAATCTTCGTTAAAACATTGACGGGAAAAACAATTACTCTGGAGGTTGAACCTTCT 2844877 Query 24764 GACACAGTAGAAA-CGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| | |||| || |||| ||||| || ||||||||||| || || || || ||||| Sbjct 2844878 GATACAATCGAAAACGTTAAAGCAAAA-ATTCAAGACAAAGAGGGTATTCCCCCAGATCA 2844936 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATA 24881 ||||||||| || || || || || || ||||||| || ||| |||| || || | Sbjct 2844937 ACAACGTTTAATTTTCGCTGGCAAGCAATTGGAGGA-CGGACGCACATTGTCCGACTACA 2844995 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 |||| |||||||| || ||||| |||||||| ||||| Sbjct 2844996 ACATCCAAAAGGAGTCAACACTTCACTTGGTATTGCG 2845032 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || ||||||||||| || || | ||||| || | || Sbjct 2845046 ATGCAAATCTTTGTGAAGACCCTGACCGGTAAAACCATAACCTTGGAAGTTGAGCCTTCC 2845105 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || || | ||| | ||| |||||||| || || || || || || ||||| Sbjct 2845106 GATACTATTGAGAATGTTAAGGCCAAA-ATCCAAGATAAGGAGGGCATTCCACCAGATCA 2845164 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||||||||||||||||| ||||| ||||||| | | | |||| || || || Sbjct 2845165 ACAACGTTTGATCTTTGCCGGTAAACAATTGGAGGACGGACGCACCCTGTCGGACTACAA 2845224 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || ||||||||||| || || || ||||| ||||| Sbjct 2845225 TATCCAAAAGGAATCAACTCTTCATTTGGTATTGCG 2845260 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | || || || || || || || || || ||| | || Sbjct 2844362 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCATCC 2844421 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||| || |||||||||||||| || || |||||| Sbjct 2844422 GATACTATTGAAAATGTTAAAGCTAAGATTCAGGACAAAGAAGGAATCCCCCCAGATCAA 2844481 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||| ||||||||||| ||||| ||||| || | | | |||| ||||| ||| Sbjct 2844482 CAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGTACCTTGTCCGATTACAAC 2844541 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || ||||| || ||||| Sbjct 2844542 ATCCAGAAGGAGTCTACACTTCATTTGGT 2844570 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| | || || ||||| || || | || || || | || Sbjct 2844590 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 2844649 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| || || ||||| || |||||||| || || |||||| Sbjct 2844650 GATACTATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAA 2844709 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 ||||||||||| || || || |||||| ||||||| | || ||| |||| || ||||| Sbjct 2844710 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGA-TGGACGCACACTGTCCGACTATAA 2844768 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||||||| ||| |||| || || | || || || || || Sbjct 2844769 TATTCAGAAGGAATCCACATTACATTTAGTTCTACGCTTACGTGGTGG 2844816 Score = 109 bits (120), Expect = 5e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||||||||| || || || || || || |||||||| || |||||||| ||||| || Sbjct 2846971 AAGATCCAAGATAAGGAGGGTATTCCACCAGATCAACAGCGATTGATCTTCGCCGGCAAG 2847030 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| |||||| | | |||| || || || || || |||||||||||||| || Sbjct 2847031 CAGCTTGAGGATGGACGTACTTTGTCCGACTACAATATACAGAAGGAATCGACACTCCAT 2847090 Query 24908 TTGGTGTTGCGATTGCGCGGAGGCG 24932 |||||| | || | |||||||||| Sbjct 2847091 TTGGTGCTACGTCTTCGCGGAGGCG 2847115 >seq48 Length=1730007 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| |||| ||||| || || || | || || || |||| | Sbjct 776672 ATGCAGATTTTCGTCAAAACATTAACTGGTAAGACCATCACCTTAGAGGTCGA-GCCATC 776730 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || ||| || || ||||||||||| || || || || ||||| Sbjct 776731 TGACACCATCGAAAATGTCAAAGCTAAAATTCAAGACAAAGAGGGTATCCCACCAGATCA 776790 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| ||||||||||| ||||| ||||| |||| ||| | | | |||| || || || Sbjct 776791 ACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAA 776850 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| |||||||| || || || || ||||||||||| Sbjct 776851 CATCCAAAAGGAGTCAACCCTCCATTTGGTGTTGCG 776886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449866264632160