Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq10 132 4e-26 seq27 109 5e-19 seq558 82.4 6e-11 >seq10 Length=3877145 Score = 132 bits (146), Expect = 4e-26 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 ||||| || | ||| || || ||||||| ||||| ||||| ||||| |||||||| || Sbjct 3475478 TTGTAGTCAAACTGGGTCTGTGCGCCCAATTCGCAGCCGAAATACTTGGTCGGGTAGGTG 3475537 Query 34492 GCCGGACGTCCAA--GCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGC 34549 ||||||||||||| |||| | || | || | ||| ||||| || || ||||| |||| Sbjct 3475538 GCCGGACGTCCAATGGCGCGT--GCCACCTCAGCCATATTGACAATAACGGTCTTAATGC 3475595 Query 34550 CGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609 | || || || || ||||||||||| | ||| |||||||| || |||||||| || Sbjct 3475596 CATTACCTTTGCCCTCGACCTTGGCTTGCAAGCGTGGCATTTTATAACGGTAGAAAATGT 3475655 Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 | | ||||| || || || || || | ||||| Sbjct 3475656 CGGTGACATTACGATTCACATTAACGGAACCCAT 3475689 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATAA 34263 || || || |||| ||||| ||||| | ||| || || | || || || || Sbjct 3474807 GGTGGATTCTTCAAAATGAACGTGTTAACCTTGTGATTGACTTTTAAGAGACCATGGAAA 3474866 Query 34264 CCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGTC 34323 ||||| |||||||| | || | || | | || |||| || ||| | | || ||| Sbjct 3474867 CCGCAAGCTTTGCATGCTTGCGAAATGGTTTGGTTCCTAGCCGAAACGGTTAAATCGGTC 3474926 Query 34324 TCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTCC 34383 ||||| ||||| |||||||| ||||| || || ||||| ||||||||||| ||||| ||| Sbjct 3474927 TCCGGATTGTCGCATTCCGGGCACAAGACGAATTTGCGTATGAAACCATCGAGCAGATCC 3474986 Query 34384 TGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 || || || || ||||| ||||| || || ||||| ||||| || Sbjct 3474987 TGCAATTTGCTGGCATCGTGCGAGCCATTTACAATGAAACGTTCATT 3475033 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| || || || || || || ||||| ||||| || | || || || Sbjct 2844359 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 2844418 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||||| | | | || ||| |||||| ||||||||||| | ||| ||| Sbjct 2844419 TCCGATACTATTGAAAATGTTAAAGCTAAGATTCAGGACAAAGAAGGAATCCCCCCAGAT 2844478 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | | || | ||| |||||||| ||||| || | | || || | |||||| Sbjct 2844479 CAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGTACCTTGTCCGATTAC 2844538 Query 110450 AACATTCAAAAAGAATCTAC 110469 ||||| || || || ||||| Sbjct 2844539 AACATCCAGAAGGAGTCTAC 2844558 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||||||||| || || |||||||| || | || |||||| | Sbjct 2844590 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 2844649 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| || ||| || || ||||| | || |||||| Sbjct 2844650 GATACTATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAA 2844709 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | |||| || || |||||| ||||||||| | ||| || | || || || Sbjct 2844710 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 2844769 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 ||||| || ||||| || || || Sbjct 2844770 ATTCAGAAGGAATCCACATTACA 2844792 >seq27 Length=2235907 Score = 109 bits (120), Expect = 5e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 103645 ACCCGTACACCCCGAGTATGCAATAGAAGCTGCGCGTTTGCGCACTTTTACCGCGTGGCC 103704 ||||| | | ||||||||||| || ||||| || || || || | ||| ||| ||||| Sbjct 797482 ACCCGAATATCCCGAGTATGCCATCGAAGCGGCACGCTTACGTTCGTTTGCCGAATGGCC 797423 Query 103705 GCGCGGTTTGAAGCAACATCCCGAGATACTTGCCGAAGCTGGTTTCTTTTACACCGGCAA 103764 ||| ||||||||| |||| || | | ||||| || || ||||| || ||||||| Sbjct 797422 ACGCAACATGAAGCAACGTCCCAAGGAATTAGCCGATGCCGGCTTCTTCTATACCGGCAC 797363 Query 103765 AAGCGACAAAGTCAAATGCTTTTACTGCAACGGCGGTCTGAACAATTGGGAGCAAGATGA 103824 | || ||||| |||||| |||| | | || || || ||||||| | ||||| Sbjct 797362 CGGTGATCGCGTCAAGTGCTTTAGCTGCGGCTGTGGCCTTAAGGATTGGGATGATGATGA 797303 Query 103825 CGACCCGTGGCAACAACACGCGCTTTGG 103852 ||| || ||| |||| || ||||| ||| Sbjct 797302 CGAGCCATGGGAACAGCATGCGCTCTGG 797275 >seq558 Length=79715 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| || || ||||| | || || |||||||| || | || || ||| Sbjct 66181 AATGCAAATTTTCGTAAAAACCCTTACGGGTAAAACCATCACTCTTGAGGTTGAACCTTC 66240 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| ||| || || ||| || || || || ||||| | || ||||| Sbjct 66241 GGATACTATCGAACATGTTAAAGCCAAAATCCAAGATAAGGAAGGGATTCCACCAGATCA 66300 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | | |||| ||| || ||||| ||||||||| | ||| |||| || ||||| Sbjct 66301 ACAGCGTTTAATTTTTGCCGGAAAACAATTGGAGGATGGTCGCACATTGGCAGACTACAA 66360 Query 110452 CATTCAAAAAGAATCTACGTTGCAC 110476 |||||| || || ||||| || ||| Sbjct 66361 CATTCAGAAGGAGTCTACATTACAC 66385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412813564442996