Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_022980.1 Length=45798 Score E Sequences producing significant alignments: (Bits) Value seq884 176 1e-39 >seq884 Length=19560 Score = 176 bits (194), Expect = 1e-39 Identities = 556/847 (66%), Gaps = 35/847 (4%) Strand=Plus/Plus Query 843 TGGATTGAGGAGCTTGCTGAGTTCAAAACAGAAGATGAAGTAACAACCATCGAAAATTCC 902 |||||||||||| | | ||||| ||||| |||||||||||||| ||||| ||||| Sbjct 7729 TGGATTGAGGAGTTAGGCGAGTTTAAAACTGAAGATGAAGTAACGACCATTACCAATTCA 7788 Query 903 GTATTACGTGCGGAGTTGCCAGATGGTCTTTTTTATGCTTTCTTCTACTCATACAACCCA 962 | ||||||| || || | |||||||||||||| ||||| | | |||||||| Sbjct 7789 CTTTTACGTGGTGAATTAGGAAATGGTCTTTTTTATAAATTCTTTTTCAGCTACAACCCG 7848 Query 963 CCAAAACGTAAGCAATCATGGGTGAACAAGAAGTACGAGACACAGTTCCAAGCAAGTAAC 1022 ||||||||| ||||| |||||||||||||| || || | |||||| | ||| Sbjct 7849 CCAAAACGTCGACAATCTTGGGTGAACAAGAAATATGAATCTAGTTTCCAACCTGATAAT 7908 Query 1023 ACTTATGTACATCATAGTAGTTATTTACAGAATCCTTATATCTCTAAAGCGTTCATAGCT 1082 || | ||| ||||| || |||| | | ||||||| ||| || | || ||| | Sbjct 7909 ACATTTGTTCATCACTCTACTTATAAAGATAATCCTTTTATTTCGAGAGAATTCTTGAAA 7968 Query 1083 GAAGCTGAGGGAGTAAAAGAAAAGAA--CCTACAGAAATATGAATGGGAGTATCTAGGTA 1140 |||| |||| || || ||| | || | | | || |||||| || ||| Sbjct 7969 GAAGTGGAGGCAGCAAGAGATAGAAATCCTTTTCGTGCTA--GATGGGAATACGATGGTG 8026 Query 1141 AAGCGATAGGGAGTGGTGTTGTGCCGTTTGATAA-TCTGAATTTCAGA-----CGAATCA 1194 |||| || || ||| || || || || ||| | || | ||| | || | Sbjct 8027 AAGCAATCGGTTCTGGAGTCGTTCCATTCAGTAACTTAAAAGTGGAGAAAGGCTGTATAA 8086 Query 1195 CAAATGAAGAGATCAAAACGTTTGATAATATACGTCAAGGGATCGACTGGGGTTATGGTG 1254 | ||||| | | | ||||||||||| | | || | |||| ||||||| | Sbjct 8087 CTGATGAAATGGTTGCTAACTTTGATAATATCAGAAACGGTCTTGACTTCGGTTATGCTA 8146 Query 1255 TTGATCCGTTTGCTTTCGTCCGTTGGCATTATGACAA-AACAAGA--CGCAAAATATATG 1311 |||||| || || ||||| || ||||| || || || || |||| || || |||| Sbjct 8147 CTGATCCATTAGCATTCGTACGATGGCACTACGATAAGAAAAAGAATGGC---ATCTATG 8203 Query 1312 CGCTGGATGAGGTGTACGGCGTTAAGCTCTCCAATAGAGATGCAGCCGAAAAAATCAAAG 1371 | | ||||| | || || || || || ||| | || ||| |||| |||| Sbjct 8204 CTGTTGATGAAATCTATGGAGTGAAAATCAGTAATCGTGAGTTTGCCCAAAAGGCGAAAG 8263 Query 1372 CGAAAGGCTATGATACTACTTTGAGTATTG---CTGATAGCGCAGAGCCTAAATC---AG 1425 | ||||| ||| | || | |||||| | ||| ||||| |||||||| || Sbjct 8264 CAAAAGGTTATCAGTCTGAT---CGTATTGCATCGGATTCAGCAGAACCTAAATCCATAG 8320 Query 1426 TTGA--TGA--AATGAA-ACGTGATTATCATCTACGTATCAAAGGAGCTAAGAAGGGACC 1480 || ||| |||||| ||| || || | | |||||| || | ||| || || || Sbjct 8321 CAGAATTGAACAATGAACACG-GA--ATGAGCCACGTAT--TTGGGGTTAAAAAAGGCCC 8375 Query 1481 GGGTTCCGTTGAATATGGTGAGAAATGGTTGGATGACTTAGAAGAGATCGTCATTGATGC 1540 | || || | ||||| ||| ||||||||||||| || || || || || | Sbjct 8376 CGACTCTGTGCAGTATGGCGAGGAATGGTTGGATGATTTGGATTTTATTTGTATCGACCC 8435 Query 1541 TGTACGAACTCCTAACCTAGCTAGAGAATTTGAGAATATTGACTATCAAACAGACTCAGA 1600 || ||||||| || |||| | ||| ||||| || ||||| ||||| || || ||| Sbjct 8436 ACTAAGAACTCCAAATATAGCCAAAGAGTTTGAAAACATTGATTATCAGACGGATAAAGA 8495 Query 1601 CGGTAATCCTAAAGCTCGCTTAGACGATAAGGATAATCACACCATAGACGCTACACGCTA 1660 || |||||||| | | | || ||||| ||||| ||||| || || || ||| | || Sbjct 8496 TGGCAATCCTAAGCCAAGGCTTGAAGATAAAGATAACCACACAATCGATGCAACAAGATA 8555 Query 1661 TGCATTT 1667 || ||| Sbjct 8556 CGCTTTT 8562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146422310960640