Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq10 107 3e-18 seq48 89.7 8e-13 >seq10 Length=3877145 Score = 107 bits (118), Expect = 3e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | |||||||| || ||||||||||||||| | || || |||| | | Sbjct 2844819 TGCAAATCTTCGTTAAAACATTGACGGGAAAAACAATTACTCTGGAGGTTGAACCTTCTG 2844878 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || |||| || ||| ||||| ||| ||||| || ||||| || ||||||| Sbjct 2844879 ATACAATCGAAAACGTTAAAGCAAAAATTCAAGACAAAGAGGGTATTCCCCCAGATCAAC 2844938 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | ||||| || || || ||||| || || | || || | || || || | Sbjct 2844939 AACGTTTAATTTTCGCTGGCAAGCAATTGGAGGACGGACGCACATTGTCCGACTACAACA 2844998 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| || || || | || || ||||| || Sbjct 2844999 TCCAAAAGGAGTCAACACTTCACTTGGTATTGCG 2845032 Score = 107 bits (118), Expect = 3e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || || ||||| || || | || || || | | || Sbjct 2845047 TGCAAATCTTTGTGAAGACCCTGACCGGTAAAACCATAACCTTGGAAGTTGAGCCTTCCG 2845106 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| || ||||| ||| ||| || ||||||||||| ||||||| Sbjct 2845107 ATACTATTGAGAATGTTAAGGCCAAAATCCAAGATAAGGAGGGCATTCCACCAGATCAAC 2845166 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| ||||||||||| || || | || | | || || |||| Sbjct 2845167 AACGTTTGATCTTTGCCGGTAAACAATTGGAGGACGGACGCACCCTGTCGGACTACAATA 2845226 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| ||||| ||| | ||||| ||||| || Sbjct 2845227 TCCAAAAGGAATCAACTCTTCATTTGGTATTGCG 2845260 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || ||||| |||||| | || || |||| || Sbjct 2845275 TGCAAATCTTCGTGAAGACCCTTACTGGTAAAACTATTACTTTGGAGGTCGAACCATCCG 2845334 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||| || || ||| || ||| ||| || || || ||||| ||||||| Sbjct 2845335 ACACCATCGAAAACGTTAAGGCTAAGATCCAAGATAAGGAGGGAATCCCACCAGATCAAC 2845394 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| ||||||||||| || || | || || | ||||| || | Sbjct 2845395 AACGTTTGATCTTTGCCGGTAAACAATTGGAGGACGGACGTACTTTGTCCGATTACAACA 2845454 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| ||||| || | ||||| ||||| || Sbjct 2845455 TCCAAAAGGAATCAACCCTTCATTTGGTATTGCG 2845488 >seq48 Length=1730007 Score = 89.7 bits (98), Expect = 8e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||||||||| || || || || || | || || || | | Sbjct 776673 TGCAGATTTTCGTCAAAACATTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCATCTG 776732 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| ||| |||||| ||| ||||| || || ||||| ||||||| Sbjct 776733 ACACCATCGAAAATGTCAAAGCTAAAATTCAAGACAAAGAGGGTATCCCACCAGATCAAC 776792 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | || || || || |||||||| || ||| | | || || | || || || | Sbjct 776793 AGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAACA 776852 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| || || || ||||||| || || || Sbjct 776853 TCCAAAAGGAGTCAACCCTCCATTTGGTGTTGCG 776886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786111643510240