Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq48 147 2e-30 seq10 147 2e-30 >seq48 Length=1730007 Score = 147 bits (162), Expect = 2e-30 Identities = 165/218 (76%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||||||||| || || || || ||||| ||||| || || | | ||||||| Sbjct 776887 ACGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACC 776828 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| || || | ||||| | || ||||| || || ||||||||||| Sbjct 776827 ATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATACCCTCTTT 776768 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| |||||| | ||||||| |||| | |||||||| | || || || | || | Sbjct 776767 GTCTTG-AATTTTAGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCTAAGGTGA 776709 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || |||||||| ||||| || || ||||||||| Sbjct 776708 TGGTCTTACCAGTTAATGTTTTGACGAAAATCTGCATT 776671 >seq10 Length=3877145 Score = 147 bits (162), Expect = 2e-30 Identities = 176/234 (75%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||||| ||||| ||||| || || || ||||| ||||| || || | ||||| |||| Sbjct 2845033 ACGCAATACCAAGTGAAGTGTTGACTCCTTTTGGATGTTGTAGTCGGACAATG-TGCGTC 2844975 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || || | ||| |||||||| | || || | ||| ||||| || ||||||||||||| Sbjct 2844974 CGTCCTCCAATTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGGGGAATACCCTCTT 2844915 Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 ||||||| |||||||| ||| || |||| | || |||||| |||| || || ||||| Sbjct 2844914 TGTCTTG-AATTTTTGCTTTAACGTTTTCGATTGTATCAGAAGGTTCAACCTCCAGAGTA 2844856 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAACGTATGCGT 29802 || ||||| || || || |||||||| || || ||||| | ||||| |||| Sbjct 2844855 ATTGTTTTTCCCGTCAATGTTTTAACGAAGATTTGCATACCACCACGTAAGCGT 2844802 Score = 129 bits (142), Expect = 5e-25 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||||||||| || || || || || ||||| ||||| | | ||| || Sbjct 2844577 ACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAAGGTACGTCC 2844518 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || |||||||| || ||| | || || | ||| ||||| || || || || ||||| Sbjct 2844517 GTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTT 2844458 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| || | ||| ||| |||| | ||| || || |||| || || ||||| | Sbjct 2844457 GTCCTG-AATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGA 2844399 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || |||||||| ||||| || || || || |||||||| Sbjct 2844398 TGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 2844359 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||||||||||| || ||||| ||||| || || || |||| | |||||| Sbjct 2845261 ACGCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAGTCCGACAGGGTGCGTCC 2845202 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | |||||| || ||| | ||||| | ||| ||||| || ||||| ||||| || Sbjct 2845201 GTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCCTCCTT 2845142 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | ||| || ||| | || | ||| || ||| | || ||||| | ||||| Sbjct 2845141 ATCTTGGATTTTGGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACTTCCAAGGTTAT 2845082 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || | ||| || ||||| || ||||| Sbjct 2845081 GGTTTTACCGGTCAGGGTCTTCACAAAGATTTGCAT 2845046 Score = 118 bits (130), Expect = 8e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 || || || || ||||| | |||||||| || ||||| ||||| || | | ||||| Sbjct 2844807 AAGCGTAGAACTAAATGTAATGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGT 2844748 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || | ||||||||||| | ||||| | ||| ||||| || || || || || Sbjct 2844747 CCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCC 2844688 Query 29689 TTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 || ||||| |||||| | ||||||| | || | ||| || ||| | || || || | ||| Sbjct 2844687 TTATCTTG-AATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGT 2844629 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || || ||||| || || |||||||| Sbjct 2844628 GATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 2844590 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||||||||||| || ||||| ||||| ||||| ||||| | | || || Sbjct 2845489 ACGCAATACCAAATGAAGGGTTGATTCCTTTTGGATGTTGTAATCGGACAAAGTACGTCC 2845430 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | |||||| || ||| | ||||| | ||| ||||| || || || ||||| || Sbjct 2845429 GTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTT 2845370 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | || || || |||| | ||||| || |||| || || | ||| || Sbjct 2845369 ATCTTGGATCTTAGCCTTAACGTTTTCGATGGTGTCGGATGGTTCGACCTCCAAAGTAAT 2845310 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| ||||| | ||| || || || || ||||| Sbjct 2845309 AGTTTTACCAGTAAGGGTCTTCACGAAGATTTGCAT 2845274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385193040245652