Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_023559.1 Length=46145 Score E Sequences producing significant alignments: (Bits) Value seq1321 91.5 4e-14 >seq1321 Length=4872 Score = 91.5 bits (100), Expect = 4e-14 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 35138 TATCCCTTATGGATGGCTGAATATCCTAATTACAACGTAACGACTAGTCCCAACTATAAT 35197 |||| ||||||||||| |||||||| |||| | || || || ||| || || ||| Sbjct 2389 TATCAATTATGGATGGCAGAATATCCAGATTATGAAGTGACACCTTATCCAAATTACAAT 2448 Query 35198 TACTTTCCAAGTTTCGACAATATCCATCTATTCCAATTCACCAGTACCTATAAGGCTGGT 35257 || ||||| || || |||||| | | || || ||||| ||||| || || Sbjct 2449 TATTTTCCTTCATTTGAAAATATCGGTATTTTTCAGTTCACGTCAACCTACGTTGCAGGA 2508 Query 35258 GGCTTAGATGGTGACATTGATTTAACTGGGATTACTGATAACGG--CTACAAAG 35309 || |||||||| || |||||||||| || ||||||||||| || ||||||| Sbjct 2509 GGGCTAGATGGTAACGTTGATTTAACAGGTATTACTGATAATGGTTATACAAAG 2562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147532637488248