Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_023571.1 Length=46243 Score E Sequences producing significant alignments: (Bits) Value seq1321 104 7e-18 >seq1321 Length=4872 Score = 104 bits (114), Expect = 7e-18 Identities = 248/368 (67%), Gaps = 19/368 (5%) Strand=Plus/Plus Query 34200 ATTACTTT---CCAAAAGTTCAGACACCTAAAGGTTCAATCGTTGCTTTGGATGTTGAAT 34256 |||||||| || |||||||| ||||| || || ||||| || || || |||| ||| Sbjct 2198 ATTACTTTTTACCTAAAGTTCAAACACCAAAGGGATCAATTGTCGCCTTAGATGCGGAAG 2257 Query 34257 CAGGCAATCCAAACACGGCCAGTGTTAAA-TATG--CCTTGGACAAAATCCAAGCAGCTG 34313 ||| || | |||| ||| | |||| | || ||| | ||| ||| |||| Sbjct 2258 ACGGCGTTCAATCGACGGA---TGTAACGCTATGGGCGTTAGACTATATCAAAGAGGCTG 2314 Query 34314 GTTACACAGCTGTCTTATATGGTTATAA-GTCTTTTTTAATCAGTCATCTTGACCTT--- 34369 | || ||| | | | || || || || | | | ||| | ||||||| || Sbjct 2315 GATATACACCGATGCTTTACGGATACAAAGGGTATCTTACT---TCATCTTATGATTTAT 2371 Query 34370 -ACGAATTTGGCTAAGGCATATCCCTTATGGATGGCTGAATATCCTAATTACAACGTAAC 34428 ||||||| || ||| |||| ||||||||||| |||||||| |||| | || || Sbjct 2372 CACGAATT--GCAAAGAAGTATCAATTATGGATGGCAGAATATCCAGATTATGAAGTGAC 2429 Query 34429 GACTAGTCCCAACTATAATTACTTTCCAAGTTTTAATAATATCCATCTATTTCAATTCAC 34488 || ||| || || ||||| ||||| ||| | |||||| | | ||||| ||||| Sbjct 2430 ACCTTATCCAAATTACAATTATTTTCCTTCATTTGAAAATATCGGTATTTTTCAGTTCAC 2489 Query 34489 TAGTACCTATAAAGCCGGTGGCTTAGATGGTGACGTTGATTTAACTGGTTTAACCGACAA 34548 ||||| || || || |||||||| ||||||||||||| ||| | || || || Sbjct 2490 GTCAACCTACGTTGCAGGAGGGCTAGATGGTAACGTTGATTTAACAGGTATTACTGATAA 2549 Query 34549 TGGTTATA 34556 |||||||| Sbjct 2550 TGGTTATA 2557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147846216738120