Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_023612.1 Length=39078 Score E Sequences producing significant alignments: (Bits) Value seq884 100 7e-17 seq641 100 7e-17 >seq884 Length=19560 Score = 100 bits (110), Expect = 7e-17 Identities = 155/220 (70%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 29042 AAGTCATTTTAGTTGGACGTTTAACAAAAGACCCGGAATTACGTTACACACAAAGCGGGG 29101 |||| | ||||||||||||||||| ||||| || ||||| ||||| ||| || Sbjct 809 AAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTACACCGCAAGTGGTT 868 Query 29102 TGGCGGTTGCGACCTTTACATTGGCGGTCAACCGCCGCTTTACAAACCAACAAGGCGAGC 29161 || |||| | |||||| | || || ||||| ||||||||||||| | ||||| | Sbjct 869 CTGCAGTTGGAAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAAC 928 Query 29162 GCGAGGCTGATTTTATCAATTGCCAAGTATGGCGTAAAGCGGCCGAAAATGCGGCGAACT 29221 | || || ||||||||||| || | | |||||||| | || |||| ||| || | Sbjct 929 GAGAAGCGGATTTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATT 988 Query 29222 ATTTGCGGAAGGGCTCAAAATGCGGCGTTGTTGGC-GAAT 29260 || || || || || || || ||||||||| |||| Sbjct 989 ATACTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAAT 1028 >seq641 Length=27874 Score = 100 bits (110), Expect = 7e-17 Identities = 155/220 (70%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 29042 AAGTCATTTTAGTTGGACGTTTAACAAAAGACCCGGAATTACGTTACACACAAAGCGGGG 29101 |||| | ||||||||||||||||| ||||| || ||||| ||||| ||| || Sbjct 27066 AAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTACACCGCAAGTGGTT 27007 Query 29102 TGGCGGTTGCGACCTTTACATTGGCGGTCAACCGCCGCTTTACAAACCAACAAGGCGAGC 29161 || |||| | |||||| | || || ||||| ||||||||||||| | ||||| | Sbjct 27006 CTGCAGTTGGAAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAAC 26947 Query 29162 GCGAGGCTGATTTTATCAATTGCCAAGTATGGCGTAAAGCGGCCGAAAATGCGGCGAACT 29221 | || || ||||||||||| || | | |||||||| | || |||| ||| || | Sbjct 26946 GAGAAGCGGATTTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATT 26887 Query 29222 ATTTGCGGAAGGGCTCAAAATGCGGCGTTGTTGGC-GAAT 29260 || || || || || || || ||||||||| |||| Sbjct 26886 ATACTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAAT 26847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124919733826560