Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq71 179 4e-40 seq10 140 3e-28 seq558 91.5 1e-13 >seq71 Length=1348405 Score = 179 bits (198), Expect = 4e-40 Identities = 973/1535 (63%), Gaps = 59/1535 (4%) Strand=Plus/Plus Query 150404 GTGCGAAAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGAC 150463 ||||| || || |||||||| |||||||| || |||||||| || | ||| | || Sbjct 494679 GTGCGTAAGTAATACATGCCCGTTTTGAGTCCTGCTTTCCAACCATAAAAGTGTATAGAG 494738 Query 150464 GCCATTTTAGGCAAAGTAGGGTTTG-CCATGTACACGTTGAACGATTGACTTTGATCGAT 150522 | | || | || ||| ||| | | ||| || | ||||||||||| ||||||||||| Sbjct 494739 GTGAGCTT-GCCATAGTTGGGCTCGGCCACGTGTATATTGAACGATTGGCTTTGATCGAT 494797 Query 150523 AAATGCTCCCCTGTCTGCTGCCATTTCAATCATATATTTTCCATTGTTCTCCCAAATTTC 150582 ||||| || | ||||| ||||||| || | ||||| | || |||| || Sbjct 494798 GAATGCGCCACGATCTGCAGCCATTTTGATGG-AGGTTTTC-ACTG-------AAATCTC 494848 Query 150583 CCAGATTGTCATGTACAGCTTTTTTAGATTGTCGGGAATTTTGGCGATAGAAGCTATCGA 150642 ||| | ||| ||||||| | || || | || || | | || ||| || Sbjct 494849 CCAAACAGTCTTGTACAGATCGCGTATATGTTTCGGTATGGTTTCAATGTTTTGTATAGA 494908 Query 150643 TCCTCTGTTTGCCATGATTGTTTTTCGCATACTATTTGTATAGAGATTTAATTTGATTAG 150702 || | | || || || || ||| |||| || | | | || | | | || Sbjct 494909 ACCACGATGTGTTATAATGGTATTTTTCATATCATCATCCCACAAACCCAACTCGGTGAG 494968 Query 150703 ATCATCGACCAAGTAGCGGTTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAA 150762 ||| | ||||| | ||||||||||| ||||| ||||| | ||||| | | | Sbjct 494969 ATCGCGTAACAAGTGATGATTGACAACTTGGAATTCACCCGAAAGCACACGACGTGTATA 495028 Query 150763 CAAATT---ACTGTGAAACGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGT 150819 | ||| | ||| |||||||||| ||||| || ||| | ||||||||||| | Sbjct 495029 AATATTCGAAGTGT---ACGGTTCAAACGACTCATTATTGCCCATAATTTGTGCGGTAGA 495085 Query 150820 GGCCGTCGGCATGTACGCCACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTAT 150879 || || ||||| || | | |||||| || |||| || | || | ||| || Sbjct 495086 AGCAGTTGGCATCGGTGCAAGCAACAATGAGTTGCGTACACCATGTTGCTTTATTTTCTC 495145 Query 150880 TTTCAACTGTGACCAGTCCCATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAA 150939 ||||| | | ||||| ||| | ||| || ||| ||||| || ||||| | Sbjct 495146 CTTCAATTCGGTCCAGTTCCAGAGATCAGTTGGCGTTTTATCCCACATGTCATATTGTAG 495205 Query 150940 TATTCCTTCGCTCGCTTTGCTACCGGCAAACGTGCTATAAGGCTCAC---TAACAGATGC 150996 ||| || | ||| || ||| || | || |||| || | ||| | Sbjct 495206 TATACCCTTGCTGACTGGTGAACCTTCATATGTCTCGTAAGTGCCATATTTTTCAG---C 495262 Query 150997 CAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAA 151056 || ||| ||||||| || | || ||| || | |||||| ||||||| |||||| Sbjct 495263 CAATTCACAACTGGCTTCCAATGCGCCATAGTAAATAGTTTCGAATATTTGTTGATTCAA 495322 Query 151057 TAGAACGGCAGCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACC 151116 | || |||| || |||| || | |||| | || || || ||||| ||||| Sbjct 495323 CAAGTATGCCTCATCACTTTCGTATGGAAAACGCATTAAAATTAAGGCGTCGGCAAAACC 495382 Query 151117 TTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGG 151176 ||| ||||| || || ||||||||||| |||| ||| ||||| || || | | || | Sbjct 495383 TTGTATGCCAATACCAATGGGACGATGTCGCAAATTCGATTTCTTGGCC--TCCGGTAAG 495440 Query 151177 GTAGAA--ATTGCGATCAATAATTTTATTCAAACTATTCACTACATGTTT---GACCACA 151231 | | || |||| || || ||||| |||||| || | ||| ||| ||| | Sbjct 495441 GGATAATGATTGACGTCTATGATTTTGTTCAAATTACGCGTAACAATTTTTGTGACTTCT 495500 Query 151232 GTGTGCAATAGTTGAAAATCAAAAGTATCATTAT---TGATATATTTATTGACGGCAATC 151288 | || ||| ||| ||| | || | || ||| ||| | || | || || Sbjct 495501 TTAAGCC---GTTTAAAGTCATACGTTTTATCTGGTGTGACATACATGTTCAATGCTATT 495557 Query 151289 GACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACAC 151348 || |||| ||| || || || |||||||| ||| |||||| || ||||| | |||| Sbjct 495558 GAGGCTAAATTGCAAACAGCTACCTCGTCGGGTGCGGAATATTCAACAATTTCGGTACAC 495617 Query 151349 AAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCC 151408 ||||| || ||||| ||| || ||| ||||| || || | |||||||| || Sbjct 495618 AAATTACTACATTTAATCGTGCCAATATTCTGCTGATTACTCTTTCTATTGCAAGCATCT 495677 Query 151409 TTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATAATGTTTCGCATTAAT 151468 || || |||||||||||||||||||| || | || ||| |||||| | | || Sbjct 495678 TTATACAACATGTACGGTGTGCCGGTCTCTACCTGCGATTCAATAATG--GCAAACCAAA 495735 Query 151469 GTAACCGCGGGCATT----TGCTCGCGAAACTGGCCTTTATCCTCATAATGTTTGTACCA 151524 | || | || || | || | | |||| | ||||| | | || | Sbjct 495736 G--ACTTTGTGCTTTAACCTTCTTATTAGCACGTCCTTCTTGTTCATATTTCTCATATAA 495793 Query 151525 GTATTCAAAGTCATCA--CCATACGTATCGTTGAGCTTAGGACACTCGTTAGGACACATT 151582 | || || || ||| |||||| | || | | ||||||| | ||||||||| Sbjct 495794 TTTCTCGAACTCTTCACCCCATACTTCATGTAAACC--CGGACACTTATGTGGACACATT 495851 Query 151583 AATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATATATCCGGAACCCATAATGCG 151642 | ||||| | | |||| || ||| |||||||| |||||| | ||| || || Sbjct 495852 AGCGACCAGTCTTCATCGGCTTCGACACGTCGCATAAATAGATCCGGTATCCACAAGGCA 495911 Query 151643 TTCATCAAATCAC--GCGCTTTGGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAAA 151700 | | ||||| | |||| || ||||| ||||| | ||| || | |||| Sbjct 495912 TAGAATAAATCTCTTGCGCGATG--CTCTTCTTTGCCAGTATTTTTCTTCAAATCCAAAA 495969 Query 151701 CGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCGCCTTTTCGCTT-- 151758 || | || ||| |||||| ||||| | || | || |||||| ||||| Sbjct 495970 ACTCGAAAACGTCCGCATGCCATGGTTCCAGATAGATGGCAAAGGCGCCGGGACGCTTAC 496029 Query 151759 -GCCACCTTGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTC 151817 |||||||||||| || | ||| ||| ||||||||| |||| ||||||||| | | | Sbjct 496030 CGCCACCTTGATCAACATAACGTGCCACATTATTAAACACTCTCAGCATTGGCACTAAAC 496089 Query 151818 CGCTGGCGGTGCCGTTCGTAGATTTTATTTTGCTG--TTGCGGCCGCGTACGCTGTTCAC 151875 | ||| ||||| || ||| ||| || || || |||||| || | ||| Sbjct 496090 CATTGGAAGTGCCATTTGTACCCGCAATTGCAGTGCCTTTCG--CGCGTATGCAATGCAC 496147 Query 151876 GTTCAATCCAATACCGCCGCCGTGTTTAGAGATCA 151910 ||||| ||||||||||| | ||| ||||||| Sbjct 496148 ATTCAAACCAATACCGCCTGCAGATTTGGAGATCA 496182 >seq10 Length=3877145 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || |||| ||| | ||| ||||||| |||||| || || || |||||||||||| | Sbjct 2844588 CCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGAC 2844529 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | |||||| ||||||||||| ||| |||| | |||||| ||||| || || Sbjct 2844528 AAGGTACGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGG 2844469 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||| || ||| | | ||| | || || | ||||| || Sbjct 2844468 ATTCCTTCTTTGTCCTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACC 2844409 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | |||||||| ||||| || || ||||| |||||||| Sbjct 2844408 TCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 2844362 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || || |||| ||| || || ||||| |||||||| ||| | Sbjct 2845044 CCACCACGGAGACGCAATACCAAGTGAAGTGTTGACTCCTTTTGGATGTTGTAGTCGGAC 2844985 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| ||| || | ||| || ||||| | || | |||||| ||||| || || Sbjct 2844984 AATGTGCGTCCGTCCTCCAATTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGGGGA 2844925 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || |||||||| ||||||| ||| | | ||| | || || | ||||| || Sbjct 2844924 ATACCCTCTTTGTCTTGAATTTTTGCTTTAACGTTTTCGATTGTATCAGAAGGTTCAACC 2844865 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | || || || ||||||||||| ||||| ||||||||| Sbjct 2844864 TCCAGAGTAATTGTTTTTCCCGTCAATGTTTTAACGAAGATTTGCATA 2844817 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | |||||| || ||||||| || ||||| ||||| |||||||||||| Sbjct 2845501 GCCACCACGGAGACGCAATACCAAATGAAGGGTTGATTCCTTTTGGATGTTGTAATCGGA 2845442 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || || | ||| || | ||||||||| ||| |||||| |||||| ||||| || || Sbjct 2845441 CAAAGTACGTCCGTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGG 2845382 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || || || || || || | | ||| | ||||| | ||||| || Sbjct 2845381 GATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTTTCGATGGTGTCGGATGGTTCGAC 2845322 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | || || || || | || || ||||| ||||||||| Sbjct 2845321 CTCCAAAGTAATAGTTTTACCAGTAAGGGTCTTCACGAAGATTTGCATA 2845273 >seq558 Length=79715 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| | ||| | ||||| || | |||||| || || || |||||||| || | Sbjct 66408 CCACCTCTAAGACGAAGGACTAAGTGTAATGTAGACTCCTTCTGAATGTTGTAGTCTGCC 66349 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| || || | |||||| || ||| | || | ||| || ||||| || || Sbjct 66348 AATGTGCGACCATCCTCCAATTGTTTTCCGGCAAAAATTAAACGCTGTTGATCTGGTGGA 66289 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || ||||| ||| | ||||| | || || | ||||| || Sbjct 66288 ATCCCTTCCTTATCTTGGATTTTGGCTTTAACATGTTCGATAGTATCCGAAGGTTCAACC 66229 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGC 137414 |||| ||| | || || || || | ||||||||||| |||||||| || Sbjct 66228 TCAAGAGTGATGGTTTTACCCGTAAGGGTTTTTACGAAAATTTGCATTGC 66179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488509972910400