Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_024356.1 Length=42597 Score E Sequences producing significant alignments: (Bits) Value seq884 212 2e-50 >seq884 Length=19560 Score = 212 bits (234), Expect = 2e-50 Identities = 260/355 (73%), Gaps = 0/355 (0%) Strand=Plus/Plus Query 10439 TAAATGACGCCATTCTAGGCTTTGGCGGAGACGCAAACATGGCAAATAATGCTATTGTTC 10498 ||||| | | || || |||||||| || ||| | |||| | | ||||| || | | Sbjct 16869 TAAATAATGGTATCCTCGGCTTTGGTGGGTCTGCAGAGATGGTAGACAATGCGATCATCC 16928 Query 10499 AGTTATCCCAATCCTTCTCTAATGGTAAAGTAGACGCGCAAACATGGAACTCTATGATAA 10558 || |||| ||||| || || |||||||||||||| |||||||| |||||||| ||||| | Sbjct 16929 AGCTATCACAATCATTTTCAAATGGTAAAGTAGATGCGCAAACTTGGAACTCAATGATTA 16988 Query 10559 ACTCAGGACTTGGCCCAACATTAAATGCCCTAGCTAAACAAATGGGCATTACCACTGGTG 10618 || || | |||||| | |||| || |||| ||||||||||| | || ||||| Sbjct 16989 ACAGTGGTTTGGGCCCAGCTCTAAACGCATTAGCGAAACAAATGGGGTTAACTGCTGGTC 17048 Query 10619 AGTTAAAAAATGGTCTTTCAGAAGGTAAAATCTCAGTTAAAGACTTTCAAGAAGGATTAA 10678 || | ||| | ||||| || || ||| ||| |||||| |||| |||||||| ||| Sbjct 17049 AGATGAAAGAAGGTCTCTCTGATGGTTCAATTTCAGTTGAAGAATTTCAAGACTCTCTAA 17108 Query 10679 TTAAACTTGACAAAGAAGGTGGAGGCGGTCTTAAGTCATTAGAACAGATTGCCAAAGACT 10738 ||||| | | |||||||| || || || ||||| || ||||| |||||||| ||||||| Sbjct 17109 TTAAATTGAATAAAGAAGGCGGTGGAGGCCTTAAATCGTTAGAGCAGATTGCTAAAGACT 17168 Query 10739 CTACAAAAGGTATTAGTACATCACTAGCAAATGCTAAAACAGCGATGGTACGTGG 10793 |||| |||||||| || | | || || ||||| ||||| || ||||| Sbjct 17169 CTACTGCAGGTATTAAAACCGGATTGGCTAACATGAAAACTGCGATTGTTCGTGG 17223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136179788727576