Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_024384.1 Length=41156 Score E Sequences producing significant alignments: (Bits) Value seq884 113 1e-20 seq641 113 1e-20 >seq884 Length=19560 Score = 113 bits (124), Expect = 1e-20 Identities = 221/323 (68%), Gaps = 8/323 (2%) Strand=Plus/Plus Query 5020 ATGATGAACCGTGTAGTGCTTGTAGGACGATTAACGAAAGACCCTGAATTACGTTACACT 5079 ||||| |||| || ||| | || ||||| ||||||||||| || ||||| ||||| Sbjct 799 ATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTACACC 858 Query 5080 CCAGCTGGAGTAGCTGTTGCGACTTTTACGCTAGCAGTAAATCGCCCATTTAAAAATGCA 5139 || ||| || |||| | ||||| || || || || || |||| ||| | Sbjct 859 GCAAGTGGTTCTGCAGTTGGAAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAA 918 Query 5140 CAAGGAGAACAAGAAGCCGATTTCATTAATTGTGTTGTTTGGCGTAAACCAGCGGAAAAC 5199 | || |||| |||||| ||||| || || ||||| |||||||||| || || |||| Sbjct 919 AACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACA 978 Query 5200 GCAGCTAAT--TTCTTGAAAAAAGGAAGCATGGCAGGCGTTGATGGACGTGTTCAAACTC 5257 |||||| | || | ||||||| | ||| |||| ||| | ||||||||| Sbjct 979 ATGGCTAATTATACTCG--TAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTC 1036 Query 5258 GTAATTATGAGGACAGCGACGGTAAACGCGTTTTCGTTACTGAGGTAGTTGCTGAAACAG 5317 |||||||||| || | || |||| || | || ||||| || ||| || | || Sbjct 1037 GTAATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTT--TGCGAGAG 1094 Query 5318 TT--CAATTCTTAGAGCCTAAAA 5338 || ||||| |||||||| |||| Sbjct 1095 TTTCCAATTATTAGAGCCAAAAA 1117 >seq641 Length=27874 Score = 113 bits (124), Expect = 1e-20 Identities = 221/323 (68%), Gaps = 8/323 (2%) Strand=Plus/Minus Query 5020 ATGATGAACCGTGTAGTGCTTGTAGGACGATTAACGAAAGACCCTGAATTACGTTACACT 5079 ||||| |||| || ||| | || ||||| ||||||||||| || ||||| ||||| Sbjct 27076 ATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTACACC 27017 Query 5080 CCAGCTGGAGTAGCTGTTGCGACTTTTACGCTAGCAGTAAATCGCCCATTTAAAAATGCA 5139 || ||| || |||| | ||||| || || || || || |||| ||| | Sbjct 27016 GCAAGTGGTTCTGCAGTTGGAAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAA 26957 Query 5140 CAAGGAGAACAAGAAGCCGATTTCATTAATTGTGTTGTTTGGCGTAAACCAGCGGAAAAC 5199 | || |||| |||||| ||||| || || ||||| |||||||||| || || |||| Sbjct 26956 AACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACA 26897 Query 5200 GCAGCTAAT--TTCTTGAAAAAAGGAAGCATGGCAGGCGTTGATGGACGTGTTCAAACTC 5257 |||||| | || | ||||||| | ||| |||| ||| | ||||||||| Sbjct 26896 ATGGCTAATTATACTCG--TAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTC 26839 Query 5258 GTAATTATGAGGACAGCGACGGTAAACGCGTTTTCGTTACTGAGGTAGTTGCTGAAACAG 5317 |||||||||| || | || |||| || | || ||||| || ||| || | || Sbjct 26838 GTAATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTT--TGCGAGAG 26781 Query 5318 TT--CAATTCTTAGAGCCTAAAA 5338 || ||||| |||||||| |||| Sbjct 26780 TTTCCAATTATTAGAGCCAAAAA 26758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131568893839152