Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_024385.1 Length=28193 Score E Sequences producing significant alignments: (Bits) Value seq884 95.1 2e-15 >seq884 Length=19560 Score = 95.1 bits (104), Expect = 2e-15 Identities = 184/272 (68%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 15224 GCATTAAACGATGGTATCTTAGGGTTTGGTGGAACAACTGAACAGGTTACTAACTCAATT 15283 || ||||| |||||||| | || |||||||| | | || ||| || | || Sbjct 16865 GCTTTAAATAATGGTATCCTCGGCTTTGGTGGGTCTGCAGAGATGGTAGACAATGCGATC 16924 Query 15284 ACCCAATTAAGTCAAGCGTTCTCTAATGGTAAGATTGACGCTGAAACATGGAACTCGCTG 15343 | ||| || ||| | || || |||||||| | || || |||| |||||||| || Sbjct 16925 ATCCAGCTATCACAATCATTTTCAAATGGTAAAGTAGATGCGCAAACTTGGAACTCAATG 16984 Query 15344 ATTGATAGTGGTTTGGGCCCAACTTTGAATGCTATTGCTAAGCAAATGGGCATTACTACT 15403 ||| | ||||||||||||||| || | || || | || || |||||||| | ||| || Sbjct 16985 ATTAACAGTGGTTTGGGCCCAGCTCTAAACGCATTAGCGAAACAAATGGGGTTAACTGCT 17044 Query 15404 GGTGCTCTAAAGTCTGGCTTGTCTGATGGTTCCATTTCAGTATCTCAATTTAATGACGCA 15463 ||| | || || | ||||||||||| |||||||| ||||| | ||| | Sbjct 17045 GGTCAGATGAAAGAAGGTCTCTCTGATGGTTCAATTTCAGTTGAAGAATTTCAAGACTCT 17104 Query 15464 CTTGTTAACCTTGATAAAAATGGTGGTggggg 15495 || |||| | ||||| | || ||||| || Sbjct 17105 CTAATTAAATTGAATAAAGAAGGCGGTGGAGG 17136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 90093395246416