Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_024387.1 Length=43767 Score E Sequences producing significant alignments: (Bits) Value seq641 210 6e-50 >seq641 Length=27874 Score = 210 bits (232), Expect = 6e-50 Identities = 561/843 (67%), Gaps = 32/843 (4%) Strand=Plus/Minus Query 3919 TTCTT-TTTTAATACCCAAAAATAGGAGGAAATAAATTATGACTATCAAATTAAAAAACA 3977 ||||| ||||||||| || ||||||||| | || |||||| ||||| |||||| | Sbjct 16495 TTCTTATTTTAATACACATTTTTAGGAGGAATTTAAATATGACAATCAATTTAAAAGGAA 16436 Query 3978 ACCTTGTAAATTATGAGGAAAAACGAACAGCTTTTGTCAATGCTGTTAAAAACGAAGAGA 4037 | || |||||| | ||||| || | ||||||| | | |||| ||||| | || Sbjct 16435 ---TGGTCAATTATCAAGAAAAGCGTAAAGCTTTTATTGAATCTGTAAAAAATGGTGATC 16379 Query 4038 CACAAGAAATTCAAAACAAGGCTTATGTGGAAATGGTAGATGCGATGGCTGCTGATATTA 4097 |||| |||| ||||| | || | | | | |||| | || | || || Sbjct 16378 CACAGGAAAAACAAAATGAATTATACGAAGTATCTATGAATGCTTTAGCAGAAGACATGG 16319 Query 4098 TGGACCAAGCCAAGAAAGAAGCACGTCAAGAGGCAGACCAGTATATTTCA--GCTAGCCG 4155 | | | || || |||||||| ||| || ||||| || || | ||| ||| Sbjct 16318 TAGCAGAGGCTAAAAAAGAAGCTCGTATGGAAGCAGA--AGAATTTATCAATGCTTCAAA 16261 Query 4156 AACAGACAAAAATATCACGAATGAAGAAATTAAATTCTTCAATGATATTAAT-AAAGAAG 4214 || || ||| || ||| | ||||| |||||||||| || | | | | ||| | | Sbjct 16260 AATGGATAAAGGCATTACGCCTAAAGAAGTTAAATTCTTTAACGCAGTCACTGAAACAGG 16201 Query 4215 TTGGTTACAAAGAAGAAACATTGCTACCACAAACAGTCGTGGATGAAATTTTTGAAGATC 4274 ||| ||||| ||| | | || || ||||| ||||||||||||||| | ||| Sbjct 16200 ATGG----AAAGATGAAGAACTACTTCCTGAAACAACAGTGGATGAAATTTTTAATGATT 16145 Query 4275 TAACAACTGAACATCCTTTCCTTGCATCTATTGGAATGC--GTACAACCGGTTTACGTAC 4332 |||||| |||| ||| || || | ||| | | ||||| | |||||||| Sbjct 16144 TAACAAGAGAACGTCCATTA-TTAAAAGAATTAGGCTTAAAGTACA-CAGGTTTACGCTT 16087 Query 4333 TAAGTTCTTAAAATCCGAAACTAGTGGTCTTGCTGTATGGGGCAAAATCTTTGGTGAAAT 4392 || |||||||||| || | | ||| ||| ||||| ||||| || || ||||| Sbjct 16086 GAAAATCTTAAAATCTGATCCAAAAGGTGCCATTGTTTGGGGTAAAATTTTCGGCGAAAT 16027 Query 4393 CAAAGGACAATTGGATGCTACATTCAGTGAAGAAGAATCTATTCAGAATAAATTAACCGC 4452 ||||| || || ||||| || ||||| ||||| || | | || | ||| ||| || Sbjct 16026 TAAAGGTCAGTTAGATGCAACCTTCAGCGAAGACGATGCAAAACAAAGCAAAGCAACAGC 15967 Query 4453 TTTTGTAGTAGTTCCGAAAGACCTTGAAAATTTTGGACCTGTATGGGTGAAACGTTTTGT 4512 ||||||||| | || || || || | | | ||| ||||| ||| | ||||||| ||| Sbjct 15966 ATTTGTAGTATTACCAAACGATCTATTAGAATATGGTCCTGTTTGGATTAAACGTTATGT 15907 Query 4513 AGTTACTCAAATTGAAGAAGCGTTCGCAGTAGCGTTAGAAAGCGCGTTTATTATTGGTGA 4572 | |||||||||| |||| || || || || | || ||| || || | | ||| || Sbjct 15906 AACTACTCAAATTAAAGAGGCATTTGCTGTTGGCTTCGAAGATGCTTTCCTAAATGGCGA 15847 Query 4573 TGGTAAAGATAAGCCTGTTGGTCTAACTCGTAAAGTTGGAAAAGGCACTAACGTAGTAGA 4632 ||| || ||||||||| ||||| |||||||| | | | ||| || ||| | | | | Sbjct 15846 TGGAAACGATAAGCCTATTGGTTTAACTCGTGACTTAGCAAAGGGAGCTA-CTTC--AAA 15790 Query 4633 TGGTGTA------TATCCAGAAAAAGTTGCATCTGGAACACTGACATTTGCTAGCTCTAA 4686 ||||| |||||||| |||| ||| | ||||| | || ||||| | | || Sbjct 15789 CGGTGTGACTACTTATCCAGAGAAAGAAGCAGCAGGAACTTTAACTTTTGCC-GATGAAA 15731 Query 4687 GGTAACTG---TTAATGAATTAACAGATGTATATAAATATCATTCCGTAAAAGAAAATGG 4743 ||| | |||| ||||||| ||| | |||||| ||||| || ||||||||||| Sbjct 15730 A--AACAGCGATTAAAGAATTAAAAGAAATGCGTAAATACCATTCTGTTAAAGAAAATGG 15673 Query 4744 CAA 4746 ||| Sbjct 15672 CAA 15670 Score = 98.7 bits (108), Expect = 3e-16 Identities = 390/602 (65%), Gaps = 24/602 (4%) Strand=Plus/Minus Query 3088 ATTACTAAGAACTATCAGTCAGCTGATGAAGGAGGTGAGAATGAA--TGAC---GAAAAT 3142 |||||||| |||||| | | ||| |||| ||||| ||||| |||| |||||| Sbjct 17291 ATTACTAAAAACTATGAAAAAT-TGA--AAGGGGGTGAAGATGAAGATGACAGTGAAAAT 17235 Query 3143 TGAAGTCAAAGGTCCCATTATTGGAAATGATGACAAATGGATTTATGATTGGCTGGATAT 3202 |||| || || || || ||| |||||||| |||||| | ||||| | | | || || Sbjct 17234 CAAAGTTAATGGGCCAATCATTTCTAATGATGATAAATGGTTCTATGAGTTGTTTGACAT 17175 Query 3203 GGAAGCTACGTGTGCAAATGATATCAATGAAGCCTTGGTAAATGCGTCAGGTGAAG---T 3259 |||||| || | | || ||| | | || ||| || ||| ||||| | Sbjct 17174 GGAAGCAACATCCCCGAACGATGT---TTTAGATTTGTTACCTGCAAATAATGAAGATGT 17118 Query 3260 TGAAGTTTGGATAAATAGCAATGGTGGAGATGTGTTTGCTGGTAGTGAAATTTATACAGC 3319 |||||| || ||| |||| || ||| || | ||||||||||||||| Sbjct 17117 TGAAGTGACTATCAATTCATATGGCGGGCTAGTGGACATGGGGAATGAAATTTATACAGC 17058 Query 3320 ATTAAAATCATACAATGGCAATGTAGTTGTAAAAATTGTTGGAATGGCGGCAAGTGCAGC 3379 | || || | || |||| || || ||||| |||||| | |||||| || Sbjct 17057 TCTGCGTTCTTATGAGGGGCATGTGAAAGTTAACATTGT---AATGGCTGGAAGTGCTGC 17001 Query 3380 ATCTGTAATTGCGATGGCTGGAAATGAAGTATTAATTTCTCCAACTGGTCAAATGATGAT 3439 | | | |||||||||||||| || ||| ||| ||| ||||||||| ||||| Sbjct 17000 AAGTATCATTGCGATGGCTGGTAACACAGTTGCTATTAGCCCAGTTGGTCAAATTATGAT 16941 Query 3440 TCACAATGT-TCAGTATGGTGGGAGAGGTGATTAT-AGAGAGTTaaaaaaaGCCTCTGAA 3497 ||||||||| || | || | | || |||||| | | | | | ||||| ||| Sbjct 16940 TCACAATGTCGCAAT-GGGAGCTGGCGGCGATTATCACACA-ATGGACAAAGCAAGTGAG 16883 Query 3498 ATTGCTCAAAATGCTAATATATCCATTGCTAATGCTTATCAGCTGAAAACGGGAAAAACA 3557 ||| || || ||||||| ||| | |||||||| ||| ||||| || || | Sbjct 16882 ATTTTACAGAAAGCTAATAAATCTTTAGCTAATGCGTATGTTTCAAAAACAGGTAAGGCC 16823 Query 3558 TTAGAAGAACTGTTAAATATGATGGGAGAAGAAACATGGCTAAATTCTCAACAGGCTGTA 3617 ||||||| | ||| |||||| ||||||||||| ||| | || | ||||| Sbjct 16822 AAAGAAGAAATTTTAGCGTTGATGGATAAAGAAACATGGTTAACCGCAGAAGAAGCTGTT 16763 Query 3618 GAGCTAGGATTAGCAGATGGTGTGATGTTTCAAGAAAATAGCGAAACGCCAAAATTAGTA 3677 || || || || |||| | ||||| ||||||| |||| ||| |||||| Sbjct 16762 GAAAATGGTTTTGCGGATGAAATCATGTT---CGAAAATACCGAACGCCCATTATTAGTT 16706 Query 3678 GC 3679 || Sbjct 16705 GC 16704 Score = 84.2 bits (92), Expect = 6e-12 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 4973 GACCAAACGCTTGCATTTGAAGATCTTAACTTATATGCTGCAAAACAATTTGCGTATGGT 5032 || ||||| | || || |||||| | |||| |||||||||||||||||| |||| Sbjct 15443 GATCAAACATTAGCTTTAGAAGATTGTCGTTTATTCACTGCAAAACAATTTGCGTTTGGT 15384 Query 5033 AAAGCTAAAGACGAAAAAGCTGCCGCTGTATGGACATTA 5071 ||||| ||||| | |||| ||| ||||||||||||||| Sbjct 15383 AAAGCACAAGACAACAAAGTTGCAGCTGTATGGACATTA 15345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139923540996456