Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_024388.1 Length=28022 Score E Sequences producing significant alignments: (Bits) Value seq884 118 2e-22 >seq884 Length=19560 Score = 118 bits (130), Expect = 2e-22 Identities = 245/365 (67%), Gaps = 0/365 (0%) Strand=Plus/Plus Query 15374 GCATTAAATGATGGTATCCTAGGTTTTGGTGGAACAACTGAACAGGTTACTAACTCAATT 15433 || |||||| |||||||||| || |||||||| | | || ||| || | || Sbjct 16865 GCTTTAAATAATGGTATCCTCGGCTTTGGTGGGTCTGCAGAGATGGTAGACAATGCGATC 16924 Query 15434 ACCCAATTAAGTCAAGCGTTCTCTAATGGTAAGATTGATGCTGAAACATGGAACTCAATG 15493 | ||| || ||| | || || |||||||| | ||||| |||| |||||||||||| Sbjct 16925 ATCCAGCTATCACAATCATTTTCAAATGGTAAAGTAGATGCGCAAACTTGGAACTCAATG 16984 Query 15494 ATTGATAGTGGTTTGGGTCCAACTTTGAATGCTATGGCTAAGCAAATGGGTATTACGACT 15553 ||| | ||||||||||| ||| || | || || | || || |||||||| | || || Sbjct 16985 ATTAACAGTGGTTTGGGCCCAGCTCTAAACGCATTAGCGAAACAAATGGGGTTAACTGCT 17044 Query 15554 GGTGCCCTAAAGTCTGGCTTATCTGATGGTTCCATTTCAGTATCTCAATTTAATGACGCA 15613 ||| | || || | ||||||||||| |||||||| ||||| | ||| | Sbjct 17045 GGTCAGATGAAAGAAGGTCTCTCTGATGGTTCAATTTCAGTTGAAGAATTTCAAGACTCT 17104 Query 15614 CTTGTTAACCTTGATAAAAACGGTGGCGGGGGTATTGCTTCACTATCTAAGATTGCTCAA 15673 || |||| | ||||| | || || || || || || || |||||||| || Sbjct 17105 CTAATTAAATTGAATAAAGAAGGCGGTGGAGGCCTTAAATCGTTAGAGCAGATTGCTAAA 17164 Query 15674 GATAGTACGAGCGGTATTAGAACATCTATGGCTAACGCAAAGACTGCCATTAATCGTGGT 15733 || ||| ||||||| ||| |||||||| || ||||| ||| |||||| Sbjct 17165 GACTCTACTGCAGGTATTAAAACCGGATTGGCTAACATGAAAACTGCGATTGTTCGTGGC 17224 Query 15734 GTTGC 15738 || || Sbjct 17225 GTGGC 17229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 89546230500460