Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_024389.1 Length=28336 Score E Sequences producing significant alignments: (Bits) Value seq884 104 4e-18 >seq884 Length=19560 Score = 104 bits (114), Expect = 4e-18 Identities = 242/365 (66%), Gaps = 0/365 (0%) Strand=Plus/Plus Query 15366 GCATTAAATGATGGTATCCTAGGTTTTGGTGGAACAACTGAACAGGTTACTAACTCAATT 15425 || |||||| |||||||||| || |||||||| | | || ||| || | || Sbjct 16865 GCTTTAAATAATGGTATCCTCGGCTTTGGTGGGTCTGCAGAGATGGTAGACAATGCGATC 16924 Query 15426 ACCCAATTAAGTCAAGCGTTCTCTAATGGTAAGATTGATGCTGAAACATGGAACTCAATG 15485 | ||| || ||| | || || |||||||| | ||||| |||| |||||||||||| Sbjct 16925 ATCCAGCTATCACAATCATTTTCAAATGGTAAAGTAGATGCGCAAACTTGGAACTCAATG 16984 Query 15486 ATTGATAGTGGTTTGGGTCCAACTTTGAATGCTATGGCTAAGCAAATGGGTATTACGACT 15545 ||| | ||||||||||| ||| || | || || | || || |||||||| | || || Sbjct 16985 ATTAACAGTGGTTTGGGCCCAGCTCTAAACGCATTAGCGAAACAAATGGGGTTAACTGCT 17044 Query 15546 GATGCCCTAAAGTCTGGCTTATCTGATGGTTCCATTTCAGTATCTCAATTTAATGACGCA 15605 | | | || || | ||||||||||| |||||||| ||||| | ||| | Sbjct 17045 GGTCAGATGAAAGAAGGTCTCTCTGATGGTTCAATTTCAGTTGAAGAATTTCAAGACTCT 17104 Query 15606 CTTGTTAACCTTGATAAAAACGGTGGCGGGGGTATTGCTTCACTATCTAAGATTGCTCAA 15665 || |||| | ||||| | || || || || || || || |||||||| || Sbjct 17105 CTAATTAAATTGAATAAAGAAGGCGGTGGAGGCCTTAAATCGTTAGAGCAGATTGCTAAA 17164 Query 15666 GATAGTATGAGCGGTATTAGAACATCTATGGCTAATGCAAAGACTGCCATTAATCGTGGT 15725 || || ||||||| ||| ||||||| || ||||| ||| |||||| Sbjct 17165 GACTCTACTGCAGGTATTAAAACCGGATTGGCTAACATGAAAACTGCGATTGTTCGTGGC 17224 Query 15726 GTTGC 15730 || || Sbjct 17225 GTGGC 17229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 90550965764964