Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_024390.1 Length=26752 Score E Sequences producing significant alignments: (Bits) Value seq884 95.1 2e-15 >seq884 Length=19560 Score = 95.1 bits (104), Expect = 2e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 14746 CAAGCGTTCTCTAATGGTAAGATTGACGCTGAAACATGGAACTCGCTGATTGATAGTGGT 14805 ||| | || || |||||||| | || || |||| |||||||| ||||| | |||||| Sbjct 16937 CAATCATTTTCAAATGGTAAAGTAGATGCGCAAACTTGGAACTCAATGATTAACAGTGGT 16996 Query 14806 TTGGGCCCAACTTTGAATGCTATGGCGAAGCAAATGGGCATTACTACTGGTGCTCTAAAT 14865 ||||||||| || | || || | ||||| |||||||| | ||| ||||| | || Sbjct 16997 TTGGGCCCAGCTCTAAACGCATTAGCGAAACAAATGGGGTTAACTGCTGGTCAGATGAAA 17056 Query 14866 TCTGGCTTGTCTGATGGTTCCATTTCAGTATCTCAATTTAATGACGCACTTGTTAACCTT 14925 || | ||||||||||| |||||||| ||||| | ||| | || |||| | Sbjct 17057 GAAGGTCTCTCTGATGGTTCAATTTCAGTTGAAGAATTTCAAGACTCTCTAATTAAATTG 17116 Query 14926 GATAAAAATGGTGGTGGGGG 14945 ||||| | || ||||| || Sbjct 17117 AATAAAGAAGGCGGTGGAGG 17136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 85482492328740