Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq10 181 2e-40 seq558 138 2e-27 seq48 118 2e-21 seq154 89.7 1e-12 >seq10 Length=3877145 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| || || || ||||| || ||||| || || ||||| | Sbjct 2844590 TACCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGG 2844531 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | |||||||| |||||||| || |||||||||| | |||||||||||| | Sbjct 2844530 ACAAGGTACGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGG 2844471 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| || || |||||||| ||||| ||||||||||| ||||| ||||| | Sbjct 2844470 GGATTCCTTCTTTGTCCTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAA 2844411 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | |||| ||| || |||||||| ||||| ||||| || || || |||||| Sbjct 2844410 CCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATT 2844361 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || |||||||| || | || ||||| ||||| |||||||| || | Sbjct 2844818 TACCACCACGTAAGCGTAGAACTAAATGTAATGTGGATTCCTTCTGAATATTATAGTCGG 2844759 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || | ||||| ||||| || || | | |||||||||||| | Sbjct 2844758 ACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTG 2844699 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||||||||||||||| || ||||| ||||| ||||| ||||| ||| || | Sbjct 2844698 GGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAA 2844639 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| || || || || ||||| || || || || |||||||| Sbjct 2844638 CCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 2844590 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || || || ||||| ||||| || || ||||| || || | Sbjct 2845274 TACCACCACGGAGACGCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAGTCCG 2845215 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||| || | |||||| || |||||||| | | |||||||||||| | Sbjct 2845214 ACAGGGTGCGTCCGTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTG 2845155 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||||||||| || || || || ||||| ||||| ||||| ||| || | Sbjct 2845154 GAATGCCCTCCTTATCTTGGATTTTGGCCTTAACATTCTCAATAGTATCGGAAGGCTCAA 2845095 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| ||||| || || || |||| ||||| ||||| || ||||| Sbjct 2845094 CTTCCAAGGTTATGGTTTTACCGGTCAGGGTCTTCACAAAGATTTGCAT 2845046 Score = 132 bits (146), Expect = 9e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || || || || || ||||| || || || || ||||| || | | | | || Sbjct 2845489 ACGCAATACCAAATGAAGGGTTGATTCCTTTTGGATGTTGTAATCGGACAAAGTACGTCC 2845430 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || | |||||| || |||||||| | | |||||||||||| || ||||| ||||| Sbjct 2845429 GTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTT 2845370 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||| ||||| || || || ||||| || || || ||||| || |||||||| || Sbjct 2845369 ATCTTGGATCTTAGCCTTAACGTTTTCGATGGTGTCGGATGGTTCGACCTCCAAAGTAAT 2845310 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || | ||||| || || || ||||| Sbjct 2845309 AGTTTTACCAGTAAGGGTCTTCACGAAGATTTGCAT 2845274 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || ||||| || || || || || || || || || || | Sbjct 2845046 TACCACCACGGAGACGCAATACCAAGTGAAGTGTTGACTCCTTTTGGATGTTGTAGTCGG 2844987 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||||| || | ||| || ||||| || |||| | |||||||||||| | Sbjct 2844986 ACAATGTGCGTCCGTCCTCCAATTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGGG 2844927 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || || |||||||| |||||||| || ||||| || |||||| |||||| | Sbjct 2844926 GAATACCCTCTTTGTCTTGAATTTTTGCTTTAACGTTTTCGATTGTATCAGAAGGTTCAA 2844867 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| ||| || || || || ||||| || || || || || ||||| Sbjct 2844866 CCTCCAGAGTAATTGTTTTTCCCGTCAATGTTTTAACGAAGATTTGCAT 2844818 Score = 89.7 bits (98), Expect = 1e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || || || || || ||||| ||||||||||| || || || Sbjct 2847113 CCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGAC 2847054 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || || || || || || || || ||||| | || ||||||||||| || Sbjct 2847053 AAAGTACGTCCATCCTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGATCTGGTGGA 2846994 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTAC 82735 || || ||||||||||| ||||| || || || Sbjct 2846993 ATACCCTCCTTATCTTGGATCTTAGCCTTAAC 2846962 >seq558 Length=79715 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| | ||| || |||||||| | ||||| || ||||| || || || || | Sbjct 66409 ACCACCTCTAAGACGAAGGACTAAGTGTAATGTAGACTCCTTCTGAATGTTGTAGTCTGC 66350 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | | ||| || || | ||||||||| ||||| |||| | ||||||||||| || Sbjct 66349 CAATGTGCGACCATCCTCCAATTGTTTTCCGGCAAAAATTAAACGCTGTTGATCTGGTGG 66290 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||||||||| || || ||||| |||| ||| || ||||| |||||| || Sbjct 66289 AATCCCTTCCTTATCTTGGATTTTGGCTTTAACATGTTCGATAGTATCCGAAGGTTCAAC 66230 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | ||| || || || || || | || ||||| || || |||||| Sbjct 66229 CTCAAGAGTGATGGTTTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 66181 >seq48 Length=1730007 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || || || || || || || || || || || || || | Sbjct 776900 TACCACCACGAAGACGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGG 776841 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| ||||| | ||||||||| || ||||| | | ||||||||||| | Sbjct 776840 ACAAGGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTG 776781 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || || |||||||| || ||||| |||||||| || || ||| || || | Sbjct 776780 GGATACCCTCTTTGTCTTGAATTTTAGCTTTGACATTTTCGATGGTGTCAGATGGCTCGA 776721 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || || || || ||||| || || || || || || || ||||||||| Sbjct 776720 CCTCTAAGGTGATGGTCTTACCAGTTAATGTTTTGACGAAAATCTGCATT 776671 >seq154 Length=581927 Score = 89.7 bits (98), Expect = 1e-12 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 198327 ACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCAT 198386 ||| |||| ||| |||||||| || ||| |||| || | | ||||| |||||||| Sbjct 256197 ACATATGATGATCTCTGGAATGCGTCTCAATTACAACTGGTGCGTGAAGGCAAAATGCAC 256138 Query 198387 AGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGAC 198446 | ||| | | | ||| ||||| ||||||||||| |||||| ||| || || ||| Sbjct 256137 GGGTTTCTTCGTAAGTATTGGGCAAAAAAGATACTGGAATGGTCAAATACTCCAGAATCG 256078 Query 198447 GCTTTGAGTTATAG-TATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTAA 198505 || || || | || || ||| ||||| |||| ||| ||||||||| ||||| || Sbjct 256077 GCGTT-AGAAACAGCCATTTATTTAAACGATAAATACAGCTTAGACGGCAGAGATCCCAA 256019 Query 198506 CGGATACGTAGGT 198518 || || || ||| Sbjct 256018 TGGTTATGTGGGT 256006 Score = 87.8 bits (96), Expect = 4e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 198515 AGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATT 198574 ||| ||||||||||| ||| ||||| | ||||||| || ||| ||| |||| || || Sbjct 259819 AGGATGTATGTGGTCAATTGGCGGAGTGCATGATCAAGGATGGGCTGAACGACCAATTTT 259760 Query 198575 TGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGTTGCTGCATT 198634 ||| || | |||| ||||||||| | || | | || ||||||||||||| | ||||| Sbjct 259759 TGGTAAAGTGCGATACATGAATTATAAAGGATGTCAGCGAAAATTTGATGTTACGGCATT 259700 Query 198635 T 198635 | Sbjct 259699 T 259699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981757106128908