Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq154 93.3 8e-14 >seq154 Length=581927 Score = 93.3 bits (102), Expect = 8e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 183010 ACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCAT 183069 ||| |||| ||| |||||||| || ||| |||| || || | ||||| |||||||| Sbjct 256197 ACATATGATGATCTCTGGAATGCGTCTCAATTACAACTGGTGCGTGAAGGCAAAATGCAC 256138 Query 183070 AGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGAT 183129 | ||| | || | ||| ||||| ||||||||||| |||||| ||| ||||| ||| Sbjct 256137 GGGTTTCTTCGTAAGTATTGGGCAAAAAAGATACTGGAATGGTCAAATACTCCAGAATCG 256078 Query 183130 GCTTTGAGTTATAG-TATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAA 183188 || || || | || || ||| | ||| |||| ||| ||||||| | ||||| || Sbjct 256077 GCGTT-AGAAACAGCCATTTATTTAAACGATAAATACAGCTTAGACGGCAGAGATCCCAA 256019 Query 183189 CGGATACGTAGGT 183201 || || || ||| Sbjct 256018 TGGTTATGTGGGT 256006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903348277409920