Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq71 174 4e-38 seq40 95.1 3e-14 seq22 95.1 3e-14 seq106 84.2 5e-11 >seq71 Length=1348405 Score = 174 bits (192), Expect = 4e-38 Identities = 573/881 (65%), Gaps = 21/881 (2%) Strand=Plus/Minus Query 110286 CGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGT 110345 ||||||| || | | | ||||||||||| ||||| || |||||| | ||||| || Sbjct 496486 CGTGACTTTGGTTATAATTATTTTGGTTTTAAAACACTCGAACGTTCGTATTTGCTCAAG 496427 Query 110346 GTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATT 110405 | |||||| | || |||| ||||| ||||||||||| | || ||||| || ||||| Sbjct 496426 TTGAATGGCAAAATTGTTGAGCGTCCGCAACACATGTTAATGCGCGTTGCCATCGGTATA 496367 Query 110406 CATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCT 110465 ||||| | |||||| | || | |||||| || | | | | | | | Sbjct 496366 CATGGTGAAGATATTGATGCCGCAATTGAAACATACAACTTGCTTTCTGAGCGTTATTTT 496307 Query 110466 ATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGC 110525 | ||||| | || || ||||| || | || || | |||||| | || ||| Sbjct 496306 ACACATGCCTCACCAACGCTATTCGCTGCTGCCACCAAGCAACCGCAATTGTCATCGTGC 496247 Query 110526 TTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACT 110585 ||||| || || || ||||| ||||| ||||||| | | || | ||| Sbjct 496246 TTTCTGCTTACCATGGTGGACGATTCAATTGACGGTATTT-TCACA-TCGGCACATCACT 496189 Query 110586 GCTCTTATTTCTAAAAA-CT-CTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAA 110643 | | | ||| ||| || | || || |||||| | | || ||| || ||| | | Sbjct 496188 GTGCATTGATCTCCAAATCTGCAGGCGGTATTGGTTTGAATGTGCATTGCATACGCGCGA 496129 Query 110644 AAGGA---GCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAA 110700 |||| |||| | | ||| || || |||| | ||| | || |||||| | | Sbjct 496128 AAGGCACTGCAATTGCGGGTACA---AATGGCACTTCCAATGGTTTAGTGCCAATGCTGA 496072 Query 110701 GAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCAT 110757 |||| || || | ||| ||||| |||||||||| |||| | ||| | | Sbjct 496071 GAGTGTTTAATAATGTGGCACGTTATGTTGATCAAGGTGGCGGTAAGCGTCCCGGCGCCT 496012 Query 110758 TTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAA 110817 |||| |||||||| ||||| |||||| | || | || || || || || | |||| Sbjct 496011 TTGCCATCTATCTGGAACCATGGCATGCGGACGTTTTCGAGTTTTTGGATTTGAAGAAAA 495952 Query 110818 ATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATT 110877 || || ||||| || | ||| | |||||||| ||||| ||||||| | ||| Sbjct 495951 ATACTGGCAAAGAAGAGCATCGCGCAAGAGATTTATTCTATGCCTTGTGGATACCGGATC 495892 Query 110878 TATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTC 110937 |||| ||| |||||| ||| ||| ||||| || |||||||| ||| | || Sbjct 495891 TATTTATGCGACGTGTCGAAGCCGATGAAGACTGGTCGCTAATGTGTCCACATAAGTGTC 495832 Query 110938 CTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAG 110997 | ||| || ||| |||| || ||||||| || | | || || ||||||||| ||| Sbjct 495831 CGGGTTTACATGAAGTATGGGGTGAAGAGTTCGAGAAATTATATGAGAAATATGAACAAG 495772 Query 110998 AAGGCAAGTTTCGCAAACAAA----TTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAA 111053 |||| | || || || || || ||| ||| |||||||| || ||||| Sbjct 495771 AAGG-ACGT---GCTAATAAGAAGGTTAAAGCACAAAGTCTTTGGTTTGCCATTATTGAA 495716 Query 111054 TCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCT 111113 || || || || || || || || || || |||||||||||| | ||| | || | Sbjct 495715 TCGCAGGTAGAGACCGGCACACCGTACATGTTGTATAAAGATGCTTGCAATAGAAAGAGT 495656 Query 111114 AATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 ||||| |||| | || || ||||| | |||||||||||| Sbjct 495655 AATCAGCAGAATATTGGCACGATTAAATGTAGTAATTTGTG 495615 >seq40 Length=2204548 Score = 95.1 bits (104), Expect = 3e-14 Identities = 129/179 (72%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 |||||| || || |||| ||| | || ||| | || ||| | ||||| |||||||| Sbjct 540791 CATTTGCGCGATAACGATTTGGTGATCTTTAATCGTCAGCCAACGCTGCACAAAATGTCG 540850 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 ||||||| |||| ||||| || ||| | | | ||||| || | || | | Sbjct 540851 ATGATGGGTCATCGCGTCAAGGTGTTACCGTGGTCCACATTCCGTATGAACCTCT---CC 540907 Query 305429 TGTAC---GCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 ||||| |||||||||||| ||||| ||||| || ||||||||| |||||||||| || Sbjct 540908 TGTACCTCGCCTTATAATGCAGATTTCGATGGCGACGAAATGAATTTGCATGTACCGCA 540966 >seq22 Length=2856468 Score = 95.1 bits (104), Expect = 3e-14 Identities = 133/184 (72%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 ||||||| ||| ||||| |||| | |||||| | || ||| | || || || ||| Sbjct 224417 GACATTTACGCGACGATGATCTGGTTATTTTCAATCGTCAGCCAACGCTACACAAGATGA 224476 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTG 305426 |||||||| ||| ||||||||||| || | | ||||| || | ||| | || Sbjct 224477 GTATGATGGGGCATCGTGTCAAAGTATTGCCTTGGTCTACATTCCGTATGAATTT--GTC 224534 Query 305427 CTTGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 || |||| || ||||| || ||||||||||| ||||||||||| ||||||| || | Sbjct 224535 CT-GTACTTCACCCTATAACGCTGATTTTGATGGTGATGAAATGAACTTGCATGTGCCGC 224593 Query 305484 AATC 305487 |||| Sbjct 224594 AATC 224597 >seq106 Length=901566 Score = 84.2 bits (92), Expect = 5e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || || |||||| | |||||||| || ||||||||||| || ||| |||| | | || Sbjct 78998 GTGCTCTTCAATCGTCAACCATCGCTACATAAAATGTCCATTATGTGTCATCAGGCTAAG 79057 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 || | | | || || || || || | | | || ||||| || |||||||| ||| Sbjct 79058 GTGCAACCACAACGCACGTTCCGTTTCAACGAATGCGCCTGTACTCCATATAATGCAGAT 79117 Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 || ||||| |||||||||||| | ||| | || ||| Sbjct 79118 TTCGATGGTGATGAAATGAATTTACATCTGCCGCAA 79153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186728071950692