Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq48 102 2e-16 seq10 96.9 8e-15 >seq48 Length=1730007 Score = 102 bits (112), Expect = 2e-16 Identities = 159/222 (72%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| | || || || || ||||| || || || || |||||| Sbjct 776675 CAGATTTTCGTCAAAACATTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCATCTGAC 776734 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| ||| |||||||| ||||| || || || || ||| Sbjct 776735 ACCATCGAAAATGTCAAAGCTAAA-ATTCAAGACAAAGAGGGTATCCCACCAGA---TCA 776790 Query 206292 A-AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 | || || |||||||||||||| || ||||||||||| | || ||| |||| ||||| Sbjct 776791 ACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAA 776850 Query 206349 CGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 | |||| || ||||| || || || | || ||| | ||||| Sbjct 776851 CATCCAAAAGGAGTCAACCCTCCATTTGGTGTTGCGTCTTCG 776892 >seq10 Length=3877145 Score = 96.9 bits (106), Expect = 8e-15 Identities = 131/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || || || || |||||| |||| || ||| || || || | ||| || ||||| Sbjct 2844386 ACTGGCAAGACCATCACTCTGGAGGTTGAACCATCCGATACTATTGAAAATGTTAAAGCT 2844445 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 || |||||| || ||||||||||| || || ||| | | ||||| ||||| || Sbjct 2844446 AA-GATTCAGGACAAAGAAGGAATCCCCCCAGATCAACAACGTTTAATCTTTGCCGGTAA 2844504 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || ||||||| ||| | || ||| ||||||||||| ||||||| |||||||| ||||| Sbjct 2844505 ACAACTGGAAGACGGACGTACCTTGTCCGATTACAACATCCAGAAGGAGTCTACACTTCA 2844564 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| || |||||||| || ||| || ||||| ||||| Sbjct 2845289 AAGACCCTTACTGGTAAAACTATTACTTTGGAGGTCGAACCATCCGACACCATCGAAAAC 2845348 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || || ||||| || || ||| | | ||||| Sbjct 2845349 GTTAAGGCTAAGATCCAAGATAAGGAGGGAATCCCACCAGATCAACAACGTTTGATCTTT 2845408 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || ||||| || ||| | |||||| ||||||||||| |||| || || || Sbjct 2845409 GCCGGTAAACAATTGGAGGACGGACGTACTTTGTCCGATTACAACATCCAAAAGGAATCA 2845468 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| | || ||| | || || Sbjct 2845469 ACCCTTCATTTGGTATTGCGTCTCCG 2845494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181736428335812