Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_025453.1 Length=40286 Score E Sequences producing significant alignments: (Bits) Value seq641 430 3e-116 seq273 401 2e-107 seq884 361 1e-95 seq1321 118 3e-22 >seq641 Length=27874 Score = 430 bits (476), Expect = 3e-116 Identities = 259/273 (95%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 11497 CAATCAACAGGGTTGAAAGACAAGAACGGCGTTGAAATTTTTGAGGGTGATATTTTGAAA 11556 ||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 25013 CAATCAACAGGTGTAAAAGACAAGAACGGCGTTGAAATTTTTGAGGGGGATATTTTGAAA 24954 Query 11557 ATAATAGAAGTAACAAATGAAGGTATTTCAGAATACATCACTGATGTTATTTGGGAAGAC 11616 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 24953 ATAATAGAAGTAACAAATGAAGGTATTTCAGAATACATTACTGATGTTATTTGGGAAGAC 24894 Query 11617 TGTTCATTCGTGTTTAAAAGTGAGGGTGTAGATTACTATGACTCTTTTTTAGGGGCATTT 11676 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 24893 TGTTCATTCGTGTTTAAAAGTGAGGGTGTAGATTACTATGACACTTTTTTAGGGGCGTTT 24834 Query 11677 TCAGGAGATCCAAATAAGACATACCCACTTTTTGAACTATTAGTCATCGGAAATGTATGG 11736 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 24833 TCAGGAGATCCAAATACGACATACCCACTTTTTGAACTATTAGTCATCGGAAATGTATGG 24774 Query 11737 GATAACTCAAAACTATTGGAGGAAGCGGAATGA 11769 |||||| || |||||||||| | | | |||||| Sbjct 24773 GATAACCCAGAACTATTGGAAGGAACAGAATGA 24741 Score = 154 bits (170), Expect = 4e-33 Identities = 333/493 (68%), Gaps = 14/493 (3%) Strand=Plus/Minus Query 39642 GTGATAGTATCCTTGTTTTGCACGTTCTGTTCTTCCCATGTGCATTCTTTCTGTAATTGT 39701 |||||| | || | |||||||||||| || || | ||| | |||| |||| Sbjct 8159 GTGATAAAAACCCTTTTTTGCACGTTCGACTCGACCAGTAATCATGCGCTCTGATATTGA 8100 Query 39702 GTCTCGCTCTAATTGTGCAAAAACGGATAACATTCCTATCGTCGCACGGCCAAAAGGTGT 39761 | || || | |||||| |||||||||| |||||| | ||||| ||||||| || Sbjct 8099 TTTGCGTTCGAGTTGTGCGAAAACGGATAGCATTCCAACAGTCGCCGATCCAAAAGCGGT 8040 Query 39762 TGATGTGTCAAAGCTTTCTTGCATGCTGATAAAGTCTACATTATTTTTTAGAAATACATC 39821 ||||| ||||| ||||||||||| |||| || || | ||| | || | ||| Sbjct 8039 AGATGTATCAAAACTTTCTTGCATTGAAATAAGTTCAACGTCATTAGGTCTGAAAATATC 7980 Query 39822 TTCAATTAAATACAATGTATTCTTTTGTGAACGTGAAAGCCTGTCTAATTTGTAGACTAG 39881 ||||||||| |||| |||| ||||| ||||| || || | || | || ||||| | Sbjct 7979 TTCAATTAAGTACATAGTATCTTTTTGAGAACGAGAGAGACGATCGAGCTTATAGACAAT 7920 Query 39882 AACCACATCAAtttttttATTTTGAATATCAGATATCATTTCTTGTAATGCAGGGCGCTC 39941 ||| || |||| ||||||| ||| | || |||| ||||| | ||| || || || Sbjct 7919 AACTACGTCAACTTTTTTAGATTGTACGTCTTGGATCAGCTCTTGCATTGCTGGCCGTTC 7860 Query 39942 CATTTTTGCTCCTGAAAACCCTGGATCAGTATATACTTTTGCAACTGCCATA---TCTTT 39998 | ||||| | | | || | ||| |||||||||| | | ||| ||||| Sbjct 7859 TAATTTTGAAGCGCTATAACCCGCATC--GATATACTTTTTGTA-TAAAATAAAGTCTTT 7803 Query 39999 TGCTTTTGCAAAAGCTTTT---AGTTTATCTGTTTGTGCGGGAATGCTGTATCCTTCCTT 40055 |||| ||| |||| ||| |||| ||||| || |||| ||||||||| | Sbjct 7802 GGCTT---CAACGTATTTTGTCAGTCTATCGGTTTGGGCTTGAATCGAGTATCCTTCAGT 7746 Query 40056 GGCTTGTTCCATTGTGGATACACGTATATACAATGCTGCACGTT--TCATATAAAATTGC 40113 |||||||| ||||||||||||||||| | ||||| || || || | || | Sbjct 7745 TGCTTGTTCTTGAGTGGATACACGTATATAGATAGCTGCTTTTTTATCCAATTTACTTTC 7686 Query 40114 TCCTTTCAAAATA 40126 |||||||| |||| Sbjct 7685 TCCTTTCATAATA 7673 Score = 82.4 bits (90), Expect = 2e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 8219 GTTCCAAACCCTGTAGAACTTGCACCGTATCGAACATTTTTAGAAGTCGAACAACCTGAA 8278 ||||| | |||| || || ||| || |||||||||||||||| ||||| ||| Sbjct 1311 GTTCCTAGTCCTGCCGATCTACAACCTTACAGAACATTTTTAGAAGTACCTCAACCAGAA 1252 Query 8279 AGTCAATTTATTTTCCGTATGAAAGATGGCCCTCGTTGTGCAATCTTTGAAGCAGATGGT 8338 ||||||||||||||||| || || || | ||||||| | |||||||||||||| Sbjct 1251 AGTCAATTTATTTTCCGCATTAACGAGCGAGGAAATTGTGCATTATTTGAAGCAGATGGC 1192 Query 8339 GGGGCATGGAGAAATCAAGCAAT 8361 || |||| |||| ||||| Sbjct 1191 GGCTTGTGGAAGTATCATGCAAT 1169 Score = 80.6 bits (88), Expect = 7e-11 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 12589 AAACATACAGAACAAGAAATCAAAGCAATTGATGAGCGTTACTGGCCGTTTGCTGTGAAA 12648 || |||||||| ||||||| ||||| || || ||||||||||||||||||||||||| Sbjct 23678 AAGCATACAGAGAAAGAAATTAAAGCTATCGACAAGCGTTACTGGCCGTTTGCTGTGAAG 23619 Query 12649 GTTGATGGTGAATAGATGA 12667 | || | |||||| |||| Sbjct 23618 GCGGAGGATGAATAAATGA 23600 >seq273 Length=32108 Score = 401 bits (444), Expect = 2e-107 Identities = 308/361 (85%), Gaps = 3/361 (1%) Strand=Plus/Minus Query 26247 AGTAGATATTCCAGCTTTTAAAACATTGTCTATTGCTGTAACTGGCTTAGAGTTTTCTCC 26306 |||| || | || || |||||||||| | | |||||||||||||| |||||||||||||| Sbjct 8841 AGTAAATGTACCGGCATTTAAAACATCGCCAATTGCTGTAACTGGTTTAGAGTTTTCTCC 8782 Query 26307 TAAAACATCAACAGCAGATGCGGGTACTGCAGGTAGCCGACAAATCACAGCAACTGTCTT 26366 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 8781 TAAAACATCCACAGCAGATGCGGGTACTGCAGGTAGCCGACAAATCACAGCAACTGTTTT 8722 Query 26367 GCCTGAAAATGCAACCAACAAAAAAGTAACCTATAAGATTACGCCTGAAACAGAAGGTCT 26426 |||||||||||| || || |||||||||| |||| |||||||||| ||||||||| || Sbjct 8721 GCCTGAAAATGCTACAAATAAAAAAGTAAACTATTCTATTACGCCTGTAACAGAAGGCCT 8662 Query 26427 TGCTGTCTCTGAAACAGGAAATATTACTTGGACAGAAGCGGTACCGTCTGGTGTTTATAC 26486 |||||||||||||||||| |||||||||||||||||| ||||||| ||||| |||| Sbjct 8661 TGCTGTCTCTGAAACAGGTAATATTACTTGGACAGAAACGGTACCAGCTGGTACTTATGT 8602 Query 26487 CACAACAGGAACAACAGAGGATGGTaaaaaaaCAGCTCAACACACCTTAACATTGAATAA 26546 || ||| ||||||||||||||| |||||||| ||||| ||||||||| | ||||| Sbjct 8601 TACCGAAGGCGAAACAGAGGATGGTAAGAAAACAGCACAACATACCTTAACACTTAATAA 8542 Query 26547 TCAAGCTTAAAATATAAATTTAGAGGGCAGCTTAGCGGCTGTCCTTTTCTTATGGAGGAA 26606 |||||| | ||||| || || ||||||||| |||||||||||| ||||||||| | Sbjct 8541 TCAAGCAT-AAATACGAAAATA-AGGGCAGCTATTTGGCTGTCCTTTT-TTATGGAGGTA 8485 Query 26607 A 26607 | Sbjct 8484 A 8484 Score = 376 bits (416), Expect = 6e-100 Identities = 244/267 (91%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 12639 TGCTGTGAAAGTTGATGGTGAATAGATGAAACGCAACTGGAAAAGAGTAATAAATAAATT 12698 ||||||| || ||||||||||| ||||||||||| ||||||||| ||||||||||| | Sbjct 18886 TGCTGTGGAAA--GATGGTGAATAAATGAAACGCAATTGGAAAAGATTAATAAATAAAGT 18829 Query 12699 TAGTGGCATTGCAATAATGATTCTTGTAGCAAAAGCAACCGTGAGCTATTTCGTGTATGG 12758 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 18828 TAGTGGCATTGCAATAATGATTCTTGTAGCAAAAGCAGCCGTGAGCTATTTCGTGTATAG 18769 Query 12759 AAATTCCATAACAAACAGTGACCTAGTTTATTTCCTTTCATGCTCGTTTATTTTGGGATT 12818 ||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| || Sbjct 18768 CAATGACATAACAAGCAGTGACCTCGTTTATTTCCTTTCATGCTCGTTTATTTTGGGGTT 18709 Query 12819 AGGACTATATTTAGGAGGTTCCAGCGTATGAGTTATCCAGAAGTTTATATCTTAGGGCGA 12878 ||| ||||||||||||| ||| || ||||||||||||||||||||||||||||||| | Sbjct 18708 AGGGCTATATTTAGGAGATTCAAGTGTATGAGTTATCCAGAAGTTTATATCTTAGGAAGG 18649 Query 12879 CAAGTCGATGGCGTTTATGTTGAGTAT 12905 ||||||||||||||||||||||||||| Sbjct 18648 CAAGTCGATGGCGTTTATGTTGAGTAT 18622 >seq884 Length=19560 Score = 361 bits (400), Expect = 1e-95 Identities = 309/379 (82%), Gaps = 23/379 (6%) Strand=Plus/Plus Query 12659 AATAGATGAAACGCAACTGGAAAAGAGTAATAAATAAATTTAGTGGCATTGCAATAATGA 12718 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5314 AATAAATGAAACGCAACTGGAAAAGAGTAATAAATAAATTTAGTGGCATTGCAATAATGA 5373 Query 12719 TTCTTGTAGCAAAAGCAACCGTGAGCTATTTCGTGTATGGAAATTCCATAACAAACAGTG 12778 ||||||||||||||||||||||||| ||||||||| ||||||| |||||||| ||||| Sbjct 5374 TTCTTGTAGCAAAAGCAACCGTGAGTCATTTCGTGTGTGGAAATGACATAACAAGCAGTG 5433 Query 12779 ACCTAGTTTATTTCCTTTCATGCTCGTTTATTTTGGGATTAGGACTATATTTAGGAGGTT 12838 | || |||||||||||||||||||| |||||||| |||||||| |||||||||||||||| Sbjct 5434 ATCTCGTTTATTTCCTTTCATGCTCTTTTATTTTTGGATTAGGGCTATATTTAGGAGGTT 5493 Query 12839 CCAGCGTATGAGTTATCCAGAAGTTTATATCTTAGGGCGACAAGTCGATGGCGTTTATGT 12898 |||||||||||||||||||||| | ||||| | || || ||||| || ||||||||||| Sbjct 5494 CCAGCGTATGAGTTATCCAGAATTATATATACTGGGACGTCAAGTAGACGGCGTTTATGT 5553 Query 12899 TGAGTATCTG--------AGAAGAA--CGTTTTA----CACATTATCAGAT-------GC 12937 |||||| ||| ||| || || |||| ||||| ||| | Sbjct 5554 TGAGTACCTGCATGGATCAGAGCAAGCCGATTTATTTTTCGATTATACGATTGCTCACGA 5613 Query 12938 TAAACGTAATGCAGATTTTTATAACAAACACTATA-ATGGCGAATGGAAAATTTTAAAAT 12996 | || | ||| || || || ||| || || | | ||||||||||||||||||| |||| Sbjct 5614 TGAAAGAAAT-CATATGAATAAAACCAATACAAAAGATGGCGAATGGAAAATTTTGAAAT 5672 Query 12997 ACGGTAGACCAATAACGGT 13015 | |||||||| ||||| || Sbjct 5673 ATGGTAGACCGATAACAGT 5691 Score = 86.0 bits (94), Expect = 2e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 12589 AAACATACAGAACAAGAAATCAAAGCAATTGATGAGCGTTACTGGCCGTTTGCTGTGAAA 12648 ||| |||| ||||||||||||||||| ||||| ||||| || |||||||||||||||||| Sbjct 4800 AAATATACTGAACAAGAAATCAAAGCGATTGACGAGCGCTATTGGCCGTTTGCTGTGAAA 4859 Query 12649 GT 12650 || Sbjct 4860 GT 4861 Score = 84.2 bits (92), Expect = 6e-12 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 11497 CAATCAACAGGGTTGAAAGACAAGAACGGCGTTGAAATTTTTGAGGGTGAT 11547 ||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2853 CAATCCACAGGGTTGAAAGACAAGAACGGCGTTGAAATTTTTGAGGGGGAT 2903 >seq1321 Length=4872 Score = 118 bits (130), Expect = 3e-22 Identities = 76/82 (93%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 37003 TTTTTA--GGACCATTAGCTCAGTTGGTTAGAGCAAACGGCTCATAACCGTTCGGTCACA 37060 |||||| |||||||||||||||||||||||||| ||| ||||||||| ||| ||||||| Sbjct 4358 TTTTTATTGGACCATTAGCTCAGTTGGTTAGAGCCAACCGCTCATAACGGTTAGGTCACA 4417 Query 37061 GGTTCGAGTCCTGTATGGTCCA 37082 |||||||||||||||||||||| Sbjct 4418 GGTTCGAGTCCTGTATGGTCCA 4439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128785078049472