Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_025460.1 Length=42600 Score E Sequences producing significant alignments: (Bits) Value seq641 201 3e-47 >seq641 Length=27874 Score = 201 bits (222), Expect = 3e-47 Identities = 564/856 (66%), Gaps = 11/856 (1%) Strand=Plus/Minus Query 21690 AAAGAAGAAAAACTTTTGCCAGAAGAAACAATTGATAGAATTTTTGAAGATTTGACGACG 21749 ||||| ||| |||| | || ||| |||| | ||| ||||||| | ||||| || | Sbjct 16196 AAAGATGAAGAACTACTTCCTGAAACAACAGTGGATGAAATTTTTAATGATTTAACAAGA 16137 Query 21750 AATCATCCGTTATTAGCTGATTTAGGTATTAAAAACGCTGGTTTGCGTTTGAAGTTCTTA 21809 | | ||| |||||| || ||||| | || || | ||||| || ||||| ||||| Sbjct 16136 GAACGTCCATTATTAAAAGAATTAGGCTTAAAGTACACAGGTTTACGCTTGAAAATCTTA 16077 Query 21810 AAATCTGAAACTTCTGGCGTAGCCGTTTGGGGTAAAATCTATGGTGAAATTAAAGGTCAA 21869 |||||||| | || | |||||||||||||| | || |||||||||||||| Sbjct 16076 AAATCTGATCCAAAAGGTGCCATTGTTTGGGGTAAAATTTTCGGCGAAATTAAAGGTCAG 16017 Query 21870 TTAGATGCTGCGTTCAGTGAAGAAACAGCAATTCAAAATAAATTGACAGCGTTTGTTGTT 21929 |||||||| | ||||| ||||| |||| |||| ||| ||||| ||||| || Sbjct 16016 TTAGATGCAACCTTCAGCGAAGACGATGCAAAACAAAGCAAAGCAACAGCATTTGTAGTA 15957 Query 21930 TTACCAAAAGATTTAAATGATTTTGGTCCTGCGTGGATTGAAAGATTTGTTCGTGTTCAA 21989 |||||||| ||| || || | |||||||| |||||| || | | ||| | |||| Sbjct 15956 TTACCAAACGATCTATTAGAATATGGTCCTGTTTGGATTAAACGTTATGTAACTACTCAA 15897 Query 21990 ATCGAAGAAGCATTTGCAGTGGCGCTT-GAAACTGCGTTCTTAAAAGGTACTGGTAAAGA 22048 || |||| |||||||| || | |||| ||| ||| ||| |||| || ||| || || Sbjct 15896 ATTAAAGAGGCATTTGCTGTTG-GCTTCGAAGATGCTTTCCTAAATGGCGATGGAAACGA 15838 Query 22049 CCAACCAATCGGCTTAAACCGTCAAGTACAAAAAGGTG-TATCGGTAAC--TGAGGGTGC 22105 | || || || |||| ||| | || ||| || | || ||| || | | | Sbjct 15837 TAAGCCTATTGGTTTAACTCGTGACTTAGCAAAGGGAGCTACTTCAAACGGTGTGACTAC 15778 Query 22106 TTATCCAGAGAAAGAAGAACAAGGTACGCTTACATTTGCTAATCCGCGCGCTACAGTTAA 22165 ||||||||||||||||| | ||| || | || ||||| || | | |||| Sbjct 15777 TTATCCAGAGAAAGAAGCAGCAGGAACTTTAACTTTTGCCGATGAAAAAACAGCGATTAA 15718 Query 22166 TGAATTGACGCAAGTGTTTAAATACCACTCAACTAACGAGAAAGGTAAATCAGTAGCGGT 22225 ||||| | || || ||||||||| || ||| || || || ||| | | || Sbjct 15717 AGAATTAAAAGAAATGCGTAAATACCATTCTGTTAAAGAAAATGGCAAACGTATTTCTGT 15658 Query 22226 TAAAGGTAATGTAACAATGGTTGTTAATCCGTCCGATGCTTTTGAGGTTCAAGCACAGTA 22285 || || ||| || |||| | || || ||||| || || || || ||| Sbjct 15657 CGCTGGGAAAGTAGTTATTGTTGCGAGCCCAGATGAAGCTTTGGATATTGAAACAGAGTT 15598 Query 22286 TACACATTTAAATGCAAATGGCGTATATGTTACTGCTTTACCATTTAATTTGAATGTTAT 22345 ||| | ||||||| || | | ||||| ||||| ||| ||| || | Sbjct 15597 TACTTCTCGTAATGCAATGGGGGACTGGGTTACGAAATTACCGTTTGGATTGCGGATTGT 15538 Query 22346 CGAGTCTACAGTCCAAGAAGCAGGTAAGGTTTTAACGTACGTTAAAGGTTTATATGATGG 22405 || ||| ||||| || | || || ||| || | |||| ||| || |||| Sbjct 15537 GGAATCTGATTTCCAAAAATCTGGAAAAGTTACCACTTTTGTTAGTGGTCGTTACGATG- 15479 Query 22406 TTATTTAGCTG--GTGGTATTAATGTTCAGA-AATTTAAAGAAACACTTGCGTTAGATGA 22462 |||| |||| | | |||| || ||| | ||| | ||||| | || ||||| || Sbjct 15478 -CATTT-GCTGCAGGAGCATTAGTGATCAAAGAATACGATCAAACATTAGCTTTAGAAGA 15421 Query 22463 TATGGATTTATACACTGCAAAACAATTTGCTTACGGCAAAGCGAAAGATAATAAAGTTGC 22522 | ||||| |||||||||||||||||| | || ||||| |||| || |||||||| Sbjct 15420 TTGTCGTTTATTCACTGCAAAACAATTTGCGTTTGGTAAAGCACAAGACAACAAAGTTGC 15361 Query 22523 TGCTGTTTGGAAATTA 22538 ||||| |||| |||| Sbjct 15360 AGCTGTATGGACATTA 15345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136189388092368