Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_025465.1 Length=40923 Score E Sequences producing significant alignments: (Bits) Value seq884 210 6e-50 >seq884 Length=19560 Score = 210 bits (232), Expect = 6e-50 Identities = 386/560 (69%), Gaps = 8/560 (1%) Strand=Plus/Plus Query 9088 TATTGATGGTGCATTAAATAGGATTGATACATTAAACAATAGTACACGCGCATTTGAGAA 9147 ||||||||| || | ||| | | ||||| |||||||| | || | |||||| || Sbjct 16651 TATTGATGGGGCTATCAATCGCGTAGATACGTTAAACAACGCAAACCGTGTATTTGAAAA 16710 Query 9148 CATGGGTGT---AGCTACAAAGGACATCACTAAGAACATGGATAAGCTACAAGAGGCA-A 9203 ||||| | ||||| | |||||| |||| ||||||| ||| |||| | | Sbjct 16711 TATGGGCTTTTCAGCTAGTGAA-ACATCA--AAGACAATGGATA-GCTTAAAGAAGAGTA 16766 Query 9204 CACGTGGTTTACCAACAGCCTTAGATAGTGCAGTGAGTAACGTTCAGTTGCTAACAGCAT 9263 | || ||||| ||| | ||||| || ||| | | ||||| || | | | | Sbjct 16767 TTCAAGGATTACCCACACCATTAGACAGCGCAATTAAAGGTGTTCAATTAATTGCTTCGT 16826 Query 9264 CAACAGATGATATGGGACTATCAGTTGACGTATTTAAAGCAATGAATGATGCTATCCTAG 9323 | ||| |||| | ||| ||||| | | || ||| | ||| ||| |||||| | Sbjct 16827 CTACAAATGACTTAGGAAAATCAGAACAGATTTTCGCAGCTTTAAATAATGGTATCCTCG 16886 Query 9324 GTTTTGGTGGGGACGCACAGATGGTTGATAGTGCGGTTGTTCAGTTATCTCAATCATTCT 9383 | ||||||||| ||| ||||||| || | |||| | | ||| |||| |||||||| | Sbjct 16887 GCTTTGGTGGGTCTGCAGAGATGGTAGACAATGCGATCATCCAGCTATCACAATCATTTT 16946 Query 9384 CAAATGGTAAGGTAGATGCGCAAACGTGGAACTCAATGATTAACAGTGGTTTAGGACCTA 9443 |||||||||| |||||||||||||| |||||||||||||||||||||||||| || || Sbjct 16947 CAAATGGTAAAGTAGATGCGCAAACTTGGAACTCAATGATTAACAGTGGTTTGGGCCCAG 17006 Query 9444 CCCTTAATGCCTTAGCAAAAGAAATGGGCATGACAACAGGTGCATTAAAAGAAGGATTGT 9503 | || || || ||||| ||| ||||||| | || | ||| | |||||||| | | Sbjct 17007 CTCTAAACGCATTAGCGAAACAAATGGGGTTAACTGCTGGTCAGATGAAAGAAGGTCTCT 17066 Query 9504 CATCAGGTAGTATATCTGTAAGACAGTTCCAAGATGCCTTAGTTAAAATGGATAAAGAGG 9563 | ||| || || || | | || ||||| | || ||||| || ||||||| | Sbjct 17067 CTGATGGTTCAATTTCAGTTGAAGAATTTCAAGACTCTCTAATTAAATTGAATAAAGAAG 17126 Query 9564 GTGGTGGCGGTCTTAAGTCATTAGAAAAGATAGCTAAAGATAGTACACAAGGTTTTGGTA 9623 | ||||| || ||||| || ||||| |||| |||||||| ||| |||| || | Sbjct 17127 GCGGTGGAGGCCTTAAATCGTTAGAGCAGATTGCTAAAGACTCTACTGCAGGTATTAAAA 17186 Query 9624 CTGCAATAGCCAACATGAAA 9643 | | | | || ||||||||| Sbjct 17187 CCGGATTGGCTAACATGAAA 17206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130823343173640