Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq71 197 1e-45 seq48 127 2e-24 seq10 113 4e-20 seq558 111 1e-19 >seq71 Length=1348405 Score = 197 bits (218), Expect = 1e-45 Identities = 1177/1867 (63%), Gaps = 54/1867 (3%) Strand=Plus/Plus Query 146549 CAACAGTGAATTGTTGTGTGTGCGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTT 146608 |||| ||||||||| | | || || || || ||||| || |||||||||||||||| Sbjct 494644 CAACTGTGAATTGTATAGCATTTGCTGCTGGCTTCGTGCGTAAGTAATACATGCCCGTTT 494703 Query 146609 TGAGGCCACATCGCCACGAGTGATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCG 146668 |||| || | ||| | | ||| || || || | || | || | ||||| | Sbjct 494704 TGAGTCCTGCTTTCCAACCATAAAAGTGTATAGAGGTGAGCTTGCCATAGTTGGGCTCGG 494763 Query 146669 CCACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCT 146728 ||||| | ||| ||||||||||||||||| ||||| ||| || || || ||||| | Sbjct 494764 CCACGTGTATATTGAACGATTGGCTTTGATCGATGAATGCGCCACGATCTGCAGCCATTT 494823 Query 146729 CAATCATGCGTTTTGTCT-TCATTTCCCAAGCGGTTTTGTACAG-CCCCTTAACGCTATC 146786 || | ||||| || || |||||| | || |||||||| | | || | || Sbjct 494824 TGATGGAG-GTTTTCACTGAAATCTCCCAAACAGTCTTGTACAGATCGCGTATATGTTTC 494882 Query 146787 TGGAATACCTTCAATGTTTTGAATAGAGCCCTTGTGCGCAAAAATAGTGTTTCGTATTTC 146846 || || |||||||||||| ||||| || || | | ||| || ||| || || Sbjct 494883 -GGTATGGTTTCAATGTTTTGTATAGAACCACGATGTGTTATAATGGTATTTTTCATATC 494941 Query 146847 GGGCGTGTAAAGGTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAA 146906 | | | | |||| || | || | |||||||| ||||| || Sbjct 494942 ATCATCCCACAAACCCAACTCGGTGAGATCGCGTAACAAGTGATGATTGACAACTTGGAA 495001 Query 146907 CTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATT 146966 || |||| |||||||| | ||| | ||| |||| | || ||||| |||||||| Sbjct 495002 TTCACCCGAAAGCACACGACGTGTATAAATATTCGAAGTGTACGGTTCAAACGACTCATT 495061 Query 146967 ATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCG 147026 |||||| | ||||| || || | || || ||||| || | ||||||||| || || Sbjct 495062 ATTGCCCATAATTTGTGCGGTAGAAGCAGTTGGCATCGGTGCAAGCAACAATGAGTTGCG 495121 Query 147027 CAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTG--CCAGTCCCACATCGACGAG--G 147082 | ||| | || || |||||||| || | ||||| ||| | || || | Sbjct 495122 TACACCATGTTGCTTTATTTTCTCCTTCAA--TTCGGTCCAGTTCCAGA--GATCAGTTG 495177 Query 147083 GCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACG 147142 |||| | ||||||||| || || || | || ||| | || || | | | Sbjct 495178 GCGTTTTATCCCACATGTCATATTGTAGTATACCCTTGCTGACTGGTGAACCTTCATATG 495237 Query 147143 TAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATA 147202 | ||| | || | | ||||||||||| || || || | || |||||||| | Sbjct 495238 TCTCGTAAGTGCCATATTTTTCAGCCAATTCACAACTGGCTTCCAATGCGCCATAGTAAA 495297 Query 147203 TGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCA 147262 | |||||| ||||||| || | | | || || || || ||||| || | ||||| Sbjct 495298 TAGTTTCGAATATTTGTTGATTCAACAAGTATGCCTCATCACTTTCGTATGGAAAACGCA 495357 Query 147263 GAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGT 147322 | | ||||| ||||| ||||| || || || | || || || ||||| ||| Sbjct 495358 TTAAAATTAAGGCGTCGGCAAAACCTTGTATGCCAATACCAATGGGACGATG----TCGC 495413 Query 147323 TGCTGCG----CTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGG 147378 | || ||| || || || |||||| || ||| || || || ||||| | Sbjct 495414 AAATTCGATTTCTTGGCCTCCGGTAAGGGATAATGATTGACGTCTATGATTTTGTTCAAA 495473 Query 147379 TTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCT-TC 147437 |||||| |||| ||| || | | ||| || | || ||||| || ||| Sbjct 495474 TTACGCGTAACAATTTTTGTGACTTCTTTAAGCCGTTTAAAGTCATACGTTTTATCTGGT 495533 Query 147438 GACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGC 147497 | || || ||| ||||| || || || || | |||||| || || ||| |||| Sbjct 495534 GTGACATA--CAT--GTTCAATGCTATTGAGGCTAAATTGCAAACAGCTACCTCGTCGGG 495589 Query 147498 GTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTG 147557 || || | || ||||||| |||| || || ||||| || || | ||| || Sbjct 495590 TGCGGAATATTCAACAATTTCGGTACACAAATTACTACATTTAATCGTGCCAATATTCTG 495649 Query 147558 CTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGAC 147617 |||||| || || | |||||| || ||||| | | |||||||||| ||||||||| || Sbjct 495650 CTGATTACTCTTTCTATTGCAAGCATCTTTATACAACATGTACGGTGTGCCGGTCTCTAC 495709 Query 147618 TTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCG 147674 |||| ||||| || ||||| | || || ||| ||| || | || Sbjct 495710 CTGCGATTCAATAATGGCAAACCAA---AGACTTTGTGCTTTAACCTTCTTATTAGCACG 495766 Query 147675 GCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAG 147734 || || | ||| || ||| || || ||| ||||| || || | || | Sbjct 495767 TCCTTCTTGTTCATATTTCTCATATAATTTCTCGAACTCTTCACCCCATACTTCATGTAA 495826 Query 147735 GCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCAT 147794 || ||||||| ||| |||||||| |||||||| || || || | || |||||||| Sbjct 495827 ACCCGGACACTTATGTGGACACATTAGCGACCAGTCTTCATCGGCTTCGACACGTCGCAT 495886 Query 147795 AAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC--GCGCTTTGCAATCCTCGGCG 147852 ||| |||||||| | ||||| || || | | ||| | |||| ||| || || | Sbjct 495887 AAATAGATCCGGTATCCACAAGGCATAGAATAAATCTCTTGCGCGATGC--TCTTCTTTG 495944 Query 147853 CCCATGTTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTA 147911 || | || ||||||| || || | | | | ||| || ||||| ||||| | || Sbjct 495945 CCAGTATTTTTCTTCAAATCCAAAAACTCGA-AAACGTCCGCATGCCATGGTTCCAGATA 496003 Query 147912 GACGGCCAGCGCACCTTTACGCTTTCCG---CCCTGGTCGACATGGCGCACCATGTTGTT 147968 || ||| | || || |||||| ||| || || || |||| || ||| || || Sbjct 496004 GATGGCAAAGGCGCCGGGACGCTTACCGCCACCTTGATCAACATAACGTGCCACATTATT 496063 Query 147969 AAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGT----GGAATTGATCT 148024 |||||| | || ||| || | | || | | |||||| || || | ||||| | Sbjct 496064 AAACACTCTCAGCATTGGCACTAAACCATTGGAAGTGCCATTTGTACCCGCAATTGCAGT 496123 Query 148025 TGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATA 148084 || |||| | ||| ||||| || | ||||| ||||| | | || || | Sbjct 496124 GCCTTTCGCGCGTATGCA----ATGCACATTCAAACCAATACCGCCTGCAGATTTGGAGA 496179 Query 148085 T---GGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGC 148141 | ||| | || || || ||| | || ||||| || |||| | | Sbjct 496180 TCAATGCACAGTGATGTGCCGAT---GTGAAAATACCGTCAATTGAATCGTCCACCATGG 496236 Query 148142 CAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGAC 148201 ||||| ||| ||||| ||| |||||| | || | || | ||| || || || Sbjct 496237 TAAGCAGAAAGCACGATGACAATTGCGGTTGCTTGGTGGCAGCAGCGAATAGCGTTGGTG 496296 Query 148202 TCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGT 148261 || || ||||| | | | | || | || || ||||| ||| | || || | Sbjct 496297 AGGCATGTGTAAAATAACGCTCAGAAAGCAAGTTGTATGTTTCAATTGCGGCATCAATAT 496356 Query 148262 CGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTT 148321 | || || || || || | || |||||||| | |||||| || || || || ||| || Sbjct 496357 CTTCACCATGTATACCGATGGCAACGCGCATTAACATGTGTTGCGGACGCTCAACAATTT 496416 Query 148322 GATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAAT 148381 || | |||||| | ||| | |||||| ||||| ||||||| || || ||| Sbjct 496417 TGCCATTCAACTTGAGCAAATACGAACGTTCGAGTGTTTTAAAACCAAAATAATTATAAC 496476 Query 148382 CAAAATC 148388 |||| || Sbjct 496477 CAAAGTC 496483 >seq48 Length=1730007 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | ||||||| ||||| |||||||||||| || ||| || | Sbjct 776886 CGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCA 776827 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||| |||| |||| | ||||||||||||||| || || || ||||| Sbjct 776826 TCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATACCCTCTTTG 776767 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | || || | ||||| || || | || | Sbjct 776766 TCTTGAATTTTAGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCTAAGGTGATG 776707 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||||||| | ||||| | |||||||||||| Sbjct 776706 GTCTTACCAGTTAATGTTTTGACGAAAATCTGCAT 776672 >seq10 Length=3877145 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | | ||||| || || |||||||| ||| || |||||| ||||| Sbjct 2844571 AACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAAGGTACGTCCGTCTTC 2844512 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || |||||||||| | |||||| ||| ||||||||||| || || |||||||| || Sbjct 2844511 CAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCCTG 2844452 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || ||| | | ||| | |||||||| || || || || | || | || || Sbjct 2844451 AATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTT 2844392 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| || || | ||| || ||||| Sbjct 2844391 GCCAGTCAAGGTCTTCACGAAGATTTGCAT 2844362 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| ||||| | ||| ||||||| | || || || ||||| || |||||| || || Sbjct 2844811 ACGTAAGCGTAGAACTAAATGTAATGTGGATTCCTTCTGAATATTATAGTCGGACAGTGT 2844752 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || | |||||| || | | || | ||| ||||||||||| || || || Sbjct 2844751 GCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGGATTCC 2844692 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| |||||| ||| | | || | |||||||| ||||| || || | Sbjct 2844691 TTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAACCTCCAA 2844632 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| || |||| |||||| | |||||||||||| Sbjct 2844631 AGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 2844590 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | |||| || ||||| || |||||||| || ||| || Sbjct 2845260 CGCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAGTCCGACAGGGTGCGTCCG 2845201 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || | |||||||||| | |||| | ||| ||||||||||| || ||||| || ||| Sbjct 2845200 TCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCCTCCTTA 2845141 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || | | || | |||||||| ||||| ||||| | || | Sbjct 2845140 TCTTGGATTTTGGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACTTCCAAGGTTATG 2845081 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| ||||| || || | || || ||||| Sbjct 2845080 GTTTTACCGGTCAGGGTCTTCACAAAGATTTGCAT 2845046 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | |||| || ||||| |||||||| ||| || ||||| Sbjct 2845488 CGCAATACCAAATGAAGGGTTGATTCCTTTTGGATGTTGTAATCGGACAAAGTACGTCCG 2845429 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || | |||||||||| | |||| | ||| ||||||||||| || || || || ||| Sbjct 2845428 TCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTA 2845369 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | || |||| || || || || | || | Sbjct 2845368 TCTTGGATCTTAGCCTTAACGTTTTCGATGGTGTCGGATGGTTCGACCTCCAAAGTAATA 2845309 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| || || || | ||| || ||||| Sbjct 2845308 GTTTTACCAGTAAGGGTCTTCACGAAGATTTGCAT 2845274 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | ||||||| ||||| |||||||||||| || || || Sbjct 2845032 CGCAATACCAAGTGAAGTGTTGACTCCTTTTGGATGTTGTAGTCGGACAATGTGCGTCCG 2844973 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || | || || || | | |||| ||| ||||||||||| || || || ||||| Sbjct 2844972 TCCTCCAATTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGGGGAATACCCTCTTTG 2844913 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||||| ||| | | ||| | ||||| | || || || || | || | Sbjct 2844912 TCTTGAATTTTTGCTTTAACGTTTTCGATTGTATCAGAAGGTTCAACCTCCAGAGTAATT 2844853 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || |||| ||||| | ||| || ||||| Sbjct 2844852 GTTTTTCCCGTCAATGTTTTAACGAAGATTTGCAT 2844818 >seq558 Length=79715 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || |||||||||||||| || || || ||| || | ||||| |||| | Sbjct 66375 GACTCCTTCTGAATGTTGTAGTCTGCCAATGTGCGACCATCCTCCAATTGTTTTCCGGCA 66316 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | |||| ||||||||||||||| || || ||||| ||||| ||||| ||| | Sbjct 66315 AAAATTAAACGCTGTTGATCTGGTGGAATCCCTTCCTTATCTTGGATTTTGGCTTTAACA 66256 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 ||||| | |||||| | || || || || | || | |||||||| || || |||||| Sbjct 66255 TGTTCGATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTTTTACCCGTAAGGGTTTTT 66196 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 66195 ACGAAAATTTGCAT 66182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476578004029920