Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_026016.1 Length=43748 Score E Sequences producing significant alignments: (Bits) Value seq641 208 2e-49 >seq641 Length=27874 Score = 208 bits (230), Expect = 2e-49 Identities = 569/862 (66%), Gaps = 11/862 (1%) Strand=Plus/Plus Query 20488 TAATTTCCAAACAGCAGCAACTTTATTATCTTTCGCTTTGCCGTAAGCAAATTGTTTTGC 20547 |||| |||| ||||| |||||||| || |||| ||||| || | |||||||||||||| Sbjct 15345 TAATGTCCATACAGCTGCAACTTTGTTGTCTTGTGCTTTACCAAACGCAAATTGTTTTGC 15404 Query 20548 AGTGTATAAATCCATATCATCTAACGCAAGTGTTTCTTTAAATT-TCTGAACATTAATAC 20606 |||| ||||| ||| ||||| || | ||||| | ||| | ||| || |||| | Sbjct 15405 AGTGAATAAACGACAATCTTCTAAAGCTAATGTTTGATCGTATTCTTTGATCACTAATGC 15464 Query 20607 CAC--CAGCTAAATAACCATCATATAGACCTTTAACGTACGTTAAAACCTTACCTGCTTC 20664 | |||| |||| |||| || |||| |||| | || ||| || || | || Sbjct 15465 TCCTGCAGC-AAATG--CATCGTAACGACCACTAACAAAAGTGGTAACTTTTCCAGATTT 15521 Query 20665 TTGAACTGTAGACTCAATAACATTCAAATTAAATGGTAAAGCAGTAACATATACGCCATT 20724 ||| | ||| || | || ||| ||| ||||| ||||| | | || | Sbjct 15522 TTGGAAATCAGATTCCACAATCCGCAATCCAAACGGTAATTTCGTAACCCAGTCCCCCAT 15581 Query 20725 TGCATTTAAATGTGTATACTGTGCTTGAACCTCAAAAGCATCGGACGGATTAACAACCAT 20784 |||||| | ||| ||| || || || || ||||| || || | |||| || Sbjct 15582 TGCATTACGAGAAGTAAACTCTGTTTCAATATCCAAAGCTTCATCTGGGCTCGCAACAAT 15641 Query 20785 TGTTACATTACCTTTAACCGCTACTGATTTACCTTTCTCGTTAGTTGAGTGGTATTTAAA 20844 ||| || || || | | ||| || || || ||| || ||||||||| Sbjct 15642 AACTACTTTCCCAGCGACAGAAATACGTTTGCCATTTTCTTTAACAGAATGGTATTTACG 15701 Query 20845 CACTTGCGTCAATTCATTAACCGTAGCGCGCGGATTAGCAAATGTAAGCGTACCTTGTTC 20904 || || | ||||| |||| || | || ||||| || | || ||| | | Sbjct 15702 CATTTCTTTTAATTCTTTAATCGCTGTTTTTTCATCGGCAAAAGTTAAAGTTCCTGCTGC 15761 Query 20905 TTCTTTCTCTGGATAAGCACCATCA--GTTACCGATA-CACCTTTTTGTACTTGACGGTT 20961 ||||||||||||||||| | || ||| || | || ||| || | ||| | Sbjct 15762 TTCTTTCTCTGGATAAGTAGTCACACCGTTTGAAGTAGCTCCCTTTGCTAAGTCACGAGT 15821 Query 20962 TAAGCCAATCGGTTGGTCTTTACCAGTACCTTTTAAGAACGCAGTTTC-AAGCGCCACTG 21020 ||| ||||| || | || || ||| || |||| ||| ||| ||| |||| | || | Sbjct 15822 TAAACCAATAGGCTTATCGTTTCCATCGCCATTTAGGAAAGCATCTTCGAAGC-CAACAG 15880 Query 21021 CAAATGCTTCTTCGATTTGAACACGAACAAATCTTTCAATCCACGCAGGACCAAAATCAT 21080 ||||||| |||| |||||| | ||| | | || |||||| |||||||| | || Sbjct 15881 CAAATGCCTCTTTAATTTGAGTAGTTACATAACGTTTAATCCAAACAGGACCATATTCTA 15940 Query 21081 TTAAATCTTTTGGTAAAACAACAAACGCTGTCAATTTATTTTGAATTGCTGTTTCTTCAC 21140 || ||| |||||||| || ||||| ||||| ||| |||| |||| ||||| | Sbjct 15941 ATAGATCGTTTGGTAATACTACAAATGCTGTTGCTTTGCTTTGTTTTGCATCGTCTTCGC 16000 Query 21141 TGAACGCAGCATCTAATTGACCTTTAATTTCACCATAGATTTTACCCCAAACAGCCACGC 21200 |||| | |||||||| |||||||||||||| || | ||||||||||||||| | | Sbjct 16001 TGAAGGTTGCATCTAACTGACCTTTAATTTCGCCGAAAATTTTACCCCAAACAATGGCAC 16060 Query 21201 CAGAAGTTTCGGATTTTAAGAACTTCAAACGCAAACCAGCATTTTTAATACCTAAGTCAG 21260 | | || |||||||||| ||||| || ||||| | | || | ||||| || Sbjct 16061 CTTTTGGATCAGATTTTAAGATTTTCAAGCGTAAACCTGTGTACTTTAAGCCTAATTCTT 16120 Query 21261 CTAATAATGGATGATTCGTTGTTAAATCTTCGAAGATTCTATCAATTGTTTCTTCTGGTA 21320 |||||||||| | | |||||||||| | || ||| ||| | |||| ||| || | Sbjct 16121 TTAATAATGGACGTTCTCTTGTTAAATCATTAAAAATTTCATCCACTGTTGTTTCAGGAA 16180 Query 21321 AAAGTTTTTCTTCTTTATATCC 21342 |||| ||| ||||| |||| Sbjct 16181 GTAGTTCTTCATCTTTCCATCC 16202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139862745019440