Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq2248 102 3e-18 seq43 102 3e-18 seq195 98.7 3e-17 seq80 98.7 3e-17 seq23 98.7 3e-17 >seq2248 Length=3066 Score = 102 bits (112), Expect = 3e-18 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 ||| || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 2661 TATAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTC 2720 Query 2825 AACCCCGGGCTTCAGC 2840 || |||||| ||| || Sbjct 2721 AATCCCGGGTTTCGGC 2736 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 2067 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 2126 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2127 CCGGGTTTCGGC 2138 Score = 89.7 bits (98), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 2757 ACTGTGTTTA-TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGT 2815 ||| | |||| | || ||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 2993 ACTTTTTTTACTTGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGT 3052 Query 2816 CCCTGGTTCAACCC 2829 ||| ||||||| || Sbjct 3053 CCCCGGTTCAATCC 3066 >seq43 Length=2014643 Score = 102 bits (112), Expect = 3e-18 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 ||| || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 165746 TATAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTC 165805 Query 2825 AACCCCGGGCTTCAGC 2840 || |||||| ||| || Sbjct 165806 AATCCCGGGTTTCGGC 165821 Score = 102 bits (112), Expect = 3e-18 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 ||| || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 166395 TATAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTC 166454 Query 2825 AACCCCGGGCTTCAGC 2840 || |||||| ||| || Sbjct 166455 AATCCCGGGTTTCGGC 166470 Score = 100 bits (110), Expect = 9e-18 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 2765 TATG-GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 |||| || ||| |||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 167652 TATGCGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTT 167593 Query 2824 CAACCCCGGGCTTCAGC 2840 ||| |||||| ||| || Sbjct 167592 CAATCCCGGGTTTCGGC 167576 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 152582 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 152523 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 152522 CCGGGTTTCGGC 152511 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 165152 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 165211 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 165212 CCGGGTTTCGGC 165223 Score = 96.9 bits (106), Expect = 1e-16 Identities = 73/85 (86%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 2757 ACTGTGTTTA-TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGT 2815 ||| | |||| | || ||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 166078 ACTTTTTTTACTTGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGT 166137 Query 2816 CCCTGGTTCAACCCCGGGCTTCAGC 2840 ||| ||||||| || ||| ||| || Sbjct 166138 CCCCGGTTCAATCCAGGGTTTCGGC 166162 >seq195 Length=399115 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 82462 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 82521 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 82522 CCGGGTTTCGGC 82533 >seq80 Length=1088167 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 145135 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 145076 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 145075 CCGGGTTTCGGC 145064 >seq23 Length=2770031 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 1779025 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 1779084 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1779085 CCGGGTTTCGGC 1779096 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 1779539 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 1779480 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1779479 CCGGGTTTCGGC 1779468 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 1783618 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 1783677 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1783678 CCGGGTTTCGGC 1783689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848634065940