Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq48 96.9 3e-15 seq10 84.2 2e-11 >seq48 Length=1730007 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||||||||| || || | ||||| | || |||| ||||| | Sbjct 776672 ATGCAGATTTTCGTCAAAACATTAACTGGTAAGACCATCACCTTAGAGGTCG-AGCCATC 776730 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || ||| |||||| || ||||||||||| || || ||||| Sbjct 776731 TGACACCATCGAAAATGTCAAAGCTAAAATTCAAGACAAAGAGGGTATCCCACCAGATCA 776790 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 || | | || | || ||| |||||| | ||||||| | | | |||| ||| ||| Sbjct 776791 ACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTC--CGACTAC 776848 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 || || ||||| || || ||| | ||||| ||||| Sbjct 776849 AACATCCAAAAGGAGTCAACCCTCCATTTGGTGTT 776883 >seq10 Length=3877145 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || |||||||| || |||||| | || || | || || ||| | Sbjct 2844818 ATGCAAATCTTCGTTAAAACATTGACGGGAAAAACAATTACTCTGGAGGTTGAACCTTCT 2844877 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || ||| ||||||| || ||||||||||| || || ||||| Sbjct 2844878 GATACAATCGAAAACGTTAAAGCAAAAATTCAAGACAAAGAGGGTATTCCCCCAGATCAA 2844937 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTACA 25352 ||| | | |||| || ||||| ||| | || || | | | |||| ||| |||| Sbjct 2844938 CAACGTTTAATTTTCGCTGGCAAGCAATTGGAGGACGGACGCACATTGTC--CGACTACA 2844995 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 | || ||||| || || || |||| || || || Sbjct 2844996 ACATCCAAAAGGAGTCAACACTTCACTTGGTATT 2845029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445063399175040