Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq71 511 7e-140 seq7 282 6e-71 >seq71 Length=1348405 Score = 511 bits (566), Expect = 7e-140 Identities = 1236/1852 (67%), Gaps = 32/1852 (2%) Strand=Plus/Plus Query 68394 TGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAA 68453 ||| || || || |||| || ||||| || ||||| || ||| |||| || || || Sbjct 494669 TGCTGGCTTCGTGCGTAAGTAATACATGCCCGTTTTGAGTCCTGCTTTCCAACCATAAAA 494728 Query 68454 ATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACT 68513 || ||| || || ||| ||| | || ||||| | || ||||| | |||||| || Sbjct 494729 GTGTATAGAGGTGAGCTTGCCATAGTTGGGCTCGGCCACGTGTATATTGAACGATTGGCT 494788 Query 68514 TTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTC 68573 |||||||||||| || || | |||||| |||||||| || | || | ||| || Sbjct 494789 TTGATCGATGAATGCGCCACGATCTGCAGCCATTTTGATGGAGGTTTTCACTGAAATCTC 494848 Query 68574 CCAAATAGTCTT--AAAAATCTGTTTGATATCATCTGGAAGGCTCGTAT--TTTGAATGG 68629 ||||| |||||| | | ||| | || | || | | || | || |||| || | Sbjct 494849 CCAAACAGTCTTGTACAGATCGCGTATATGTT-TCGGTATGGTTTCAATGTTTTGTATAG 494907 Query 68630 ATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTA 68689 | |||| || | |||||| |||| || || ||||||| |||||| ||| || | Sbjct 494908 AACCACGATGTGTTATAATGGTATTTTTCATATCATCATCCCACAAACCCAACTCGGTGA 494967 Query 68690 AAACTC-TAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTG 68748 | | | ||| || || |||| || | ||| ||||| || || | ||| | ||| || Sbjct 494968 GATCGCGTAACAAG-TGATGATTGACAACTTGGAATTCACCCGAAAGCACACGACGTGTA 495026 Query 68749 TAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGAT 68808 |||||||| || || ||||| | || |||||||| |||| |||||| || || || Sbjct 495027 TAAATATTCGAAGTGTACGGTTCAAACGACTCATTATTGCCCATAATTTGTGCGGTAGAA 495086 Query 68809 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCT 68868 ||||||||||| ||||| | ||| || || | | ||||||| | ||||| || Sbjct 495087 GCAGTTGGCATCGGTGCAAGCAACAATGAGTTGCGTACACCATGTTGCTTTATTTTCTCC 495146 Query 68869 TTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGA 68928 || | | |||| | ||| ||||||| ||| || ||| | || |||||||| Sbjct 495147 TTCAATTCGGTCCAGTTCCAGAGATCAGTTGGCGTTTTATCCCACATGTCATATTGTAGT 495206 Query 68929 ATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGT 68988 || || || || | ||| || | |||||| || |||| || | | |||||| | | Sbjct 495207 ATACCCTTGCTGACTGGTGAACCTTCATATGTCTCGTAAGTGCCATATTTTTCAGCCAAT 495266 Query 68989 TCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCT 69048 |||||||| || || ||||| || || ||||| |||||||| || | | ||| | Sbjct 495267 TCACAACTGGCTTCCAATGCGCCATAGTAAATAGTTTCGAATATTTGTTGATTCAACAAG 495326 Query 69049 TGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGA 69108 | ||| || ||| ||| ||||| || | | | ||| || || || || || || || Sbjct 495327 TATGCCTCATCACTTTCGTATGGAAAACGCATTAAAATTAAGGCGTCGGCAAAACCTTGT 495386 Query 69109 ACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAA 69168 | |||||||| || || | ||||| | ||| || | | || || || | |||||| Sbjct 495387 ATGCCAATACCAATGGGACGATGTCGCAAATTCGATTTCTTGGCCTCCGGTAAGGGATAA 495446 Query 69169 TAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAG- 69227 | ||| | ||||| ||||| || | ||| || || | ||| || || || || Sbjct 495447 TGATTGACGTCTATGATTTTGTTCAAATTACGCGTAACAATTTTTGTGACTTCTTTAAGC 495506 Query 69228 --TTTGAGAAAATCAAATCGTCCATCTA---TAACAAACATATTCAGTGCTACAGATGCT 69282 ||| ||| ||| | | |||| | ||| |||| |||| ||||| || ||| Sbjct 495507 CGTTT---AAAGTCATACGTTTTATCTGGTGTGACATACATGTTCAATGCTATTGAGGCT 495563 Query 69283 AGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTA 69342 | ||| ||||| |||||||| | | | ||||| | || || ||||| | |||| Sbjct 495564 AAATTGCAAACAGCTACCTCGTCGGGTGCGGAATATTCAACAATTTCGGTACACAAATTA 495623 Query 69343 CTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAA 69402 |||||||| || || || | ||| ||||||||||||||| | || || || || || || Sbjct 495624 CTACATTTAATCGTGCCAATATTCTGCTGATTACTCTTTCTATTGCAAGCATCTTTATAC 495683 Query 69403 AGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTA 69462 | || |||| || || || || | ||| ||||| ||||| | ||||| ||| | Sbjct 495684 AACATGTACGGTGTGCCGGTCTCTACCTGCGATTCAATAATGGCAAACCAAA-GACTTTG 495742 Query 69463 GCATTTATTACGGTCTTGTAA-CGCTTC--TCTTTTTCATATTGTGTATATAGCCGTTCG 69519 |||| || |||| | | | | || |||| |||||||| ||||| ||| Sbjct 495743 TGCTTTA--ACCTTCTTATTAGCACGTCCTTCTTGTTCATATTTCTCATATAATTTCTCG 495800 Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 || || || ||||| || |||| || || ||||| | || ||||||||| | ||||| Sbjct 495801 AACTCTTCACCCCATACTTCATGTAAACCCGGACACTTATGTGGACACATTAGCGACCAG 495860 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAG 69638 | ||||| | | || ||| |||||||||||| || ||||| | || ||| || | Sbjct 495861 TCTTCATCGGCTTCGACACGTCGCATAAATAGATCCGGTATCCACA-AGGCATAGAATAA 495919 Query 69639 ATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAAT 69698 |||||| | | || ||||| || || |||||||| || | ||| | |||||| | || Sbjct 495920 ATCTCTTGCGCGATGCTCTTCTTTGCCAGTATTTTTCTTCAAATCCAAAAACTCGAAAAC 495979 Query 69699 ATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTG 69758 || | |||||||||||| ||||| || || | | | || || || ||| || || || Sbjct 495980 GTCCGCATGCCATGGTTCCAGATAGATGGCAAAGGCGCCGGGACGCTTACCGCCACCTTG 496039 Query 69759 ATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTT 69818 ||| | || | || |||||| | ||||||||||| || | | |||||| || | Sbjct 496040 ATCAACATAACGTGCCACATTATTAAACACTCTCAGCATTGGCACTAAACCATTGGAAGT 496099 Query 69819 ACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTAT 69878 |||||||| || | ||| | | ||| | ||||| || | | | | ||| || Sbjct 496100 GCCATTTGTACCCGCAATTGCAGTGCCTTTCGCGCGTATGCAATGCACATTCAAACCAAT 496159 Query 69879 TCCTCCTGCCATTTTAGAGATTAGAGCACA---ACGTTTCAATGTGTCATATATACCCTC 69935 || ||||| ||| ||||| | ||||| | || | ||||| | ||||| || Sbjct 496160 ACCGCCTGCAGATTTGGAGATCAATGCACAGTGATGTGCCGATGTG---AAAATACCGTC 496216 Query 69936 TATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCC 69995 || ||| || | |||| |||| ||||| || |||| ||| | || | || | Sbjct 496217 AATTGAATCGTCCACCATGGTAAGCAGAAAGCACGATGACAATTGCGGTTGCTTGGTGGC 496276 Query 69996 CGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGT 70055 ||| |||| || || || || || || || | |||||||||| |||||||| Sbjct 496277 AGCAGCGAATAGCGTTGGTGAGGCATGTGTAAAATAACGCTCAGAAAGCAAGTTGTATGT 496336 Query 70056 TTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATAT 70114 |||||| || | || ||||| ||| ||| || || || || || ||||| ||||| | Sbjct 496337 TTCAATTGCGGCATCAATATCTTCAC-CATGTATACCGATGGCAACGCGCATTAACATGT 496395 Query 70115 GCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTT 70174 | || || || || || |||| ||| | || | || || || ||| || |||| Sbjct 496396 GTTGCGGACGCTCAACAATTTTGCCATTCAACTTGAGCAAATACGAACGTTCGAGTGTTT 496455 Query 70175 TAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATT 70226 |||| |||||||| || || |||||| | || || || ||| | || || Sbjct 496456 TAAAACCAAAATAATTATAACCAAAGTCACGGTCATAGATTATAGCGGAGTT 496507 >seq7 Length=4380649 Score = 282 bits (312), Expect = 6e-71 Identities = 488/707 (69%), Gaps = 3/707 (0%) Strand=Plus/Plus Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 ||| | ||| || ||||||||||| || ||| || |||||||| || || | Sbjct 4094564 CAAGCGATCAGCCACAAATTCTATATAATCGGACATTGATTTGCAATTCATACCAATTAA 4094623 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 || || || | ||| || |||| || |||| || || | || || || | || || Sbjct 4094624 ATTTACGGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTAACAGCTTCGGAAATGAT 4094683 Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAA 39624 | | | |||| ||| || || | ||||||| |||||| || || ||||| Sbjct 4094684 TTCAATAATTCGTTCATTACTTGGCTTCTGTATCAAATGTTGAAACATCAAACATGCGAA 4094743 Query 39625 GTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCAT 39684 |||||||| || ||||| |||| |||| || || ||||| || | |||||||| Sbjct 4094744 ATCACAATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAAAACGTTAAGCCAGGCAT 4094803 Query 39685 TAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTC 39744 || |||||| ||||| ||||| || || | |||||| |||| || || || ||||| Sbjct 4094804 TAAACCACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCACTGAAAAAAATACCTTC 4094863 Query 39745 TACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT--ATGTA-TCCACTT 39801 || ||||||||||||| | | || || | ||| || | | | |||| Sbjct 4094864 CACAGCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCGACTTTGAGGAAATCCAAGC 4094923 Query 39802 CTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 |||||||||| || || |||||| |||||| ||||| |||||||| || | ||| Sbjct 4094924 AAGTGCCCAATCTGCCTTACGCTTTACGGCAGGCATCGTTTCAATAGCATTGAATAAATA 4094983 Query 39862 ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG 39921 | ||| | ||| |||| ||||||||| ||||| | |||||||||||| ||||| Sbjct 4094984 GTTCCTTTGTTTCGAATCCTTAATATATGTATCGATTAATATACTATACATTTCGGAATG 4095043 Query 39922 GATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981 | ||| || || || || |||||||| || ||||| | ||| || |||| ||| ||||| Sbjct 4095044 CACGTTCTCCATAGCAATTTGAAATCCATAGAAACAACGTGCCTCTGTAACTTGGACCTC 4095103 Query 39982 TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGC 40041 || |||| ||| | ||||| ||||| || || |||||| ||||||||||| || Sbjct 4095104 CTGACTGAATCGTTCAACTAAATTCTCATTAACAATACCATCAGATGCGGCAAAAAAGGC 4095163 Query 40042 CAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101 ||||| ||| || |||| ||||| | || | ||| |||| ||||| Sbjct 4095164 TAATACGTGTGAGATGAAATGCCGTTCATTGTCAGTGAGACGTGCCCAATCATCCATATC 4095223 Query 40102 TTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 ||| || | ||| ||||| ||| |||||||||||||||| ||||||| Sbjct 4095224 TTTAGAAAGATCCACTTCCTCAACTGTCCAAAACGACGCTTCTGCCT 4095270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686860956802080