Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_027335.1 Length=145518 Score E Sequences producing significant alignments: (Bits) Value seq884 165 8e-36 >seq884 Length=19560 Score = 165 bits (182), Expect = 8e-36 Identities = 169/218 (78%), Gaps = 7/218 (3%) Strand=Plus/Plus Query 127137 GGGAGTACAATGATTAAATTTAAAGAATTTGATGTTGGGGATATACATTACGAAGAACAA 127196 ||||| | ||||||||| ||||||||||||||||| || ||||| || || ||||||||| Sbjct 3386 GGGAGCAGAATGATTAAGTTTAAAGAATTTGATGTCGGTGATATTCACTATGAAGAACAA 3445 Query 127197 CTAGAAAAATTTCAAAATGAGCAACCAAGCGCCGAATTTGTAACAATCACAGGCGGACAA 127256 ||||| |||||||||| || || | || || |||||| || ||| ||||| || | Sbjct 3446 ATAGAACAATTTCAAAAGGAACACCAAAATGCTGAATTTATACAAATTACAGGTGGGTAT 3505 Query 127257 ACAACATATGAGAAAATCTGGTTCAAATACACTGATGATAAGGTA--GACCAAGTAGAAC 127314 ||| | ||||| ||||| ||||||||||| ||||||| |||| || ||| ||||| Sbjct 3506 ACATCCTATGAAAAAATTTGGTTCAAATA---TGATGAT--GGTATTGAACAACCAGAAC 3560 Query 127315 TAAGTGAGAATCAACAAATTGTTTTGGGTTGGTTAAAA 127352 | | || ||||| || ||||| ||| |||||| ||| Sbjct 3561 TCAACGAAAATCAGCAGATTGTGCTGGATTGGTTGAAA 3598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 465497175863360