Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7 203 3e-47 seq45 197 1e-45 seq11 125 6e-24 >seq7 Length=4380649 Score = 203 bits (224), Expect = 3e-47 Identities = 456/671 (68%), Gaps = 22/671 (3%) Strand=Plus/Minus Query 43751 GCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG 43810 ||| | ||||| |||||||||| || ||||| ||| | ||||||| | | ||||| Sbjct 4095268 GCAGAAGCGTCGTTTTGGACAGTTGAGGAAGTGGATCTTTCTAAAGATATGGATGATTGG 4095209 Query 43811 ATTGCAT-TAAAACC-ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCT 43867 ||| | || |||| ||| ||||| || || || || || |||||||| Sbjct 4095208 ---GCACGTCTCACTGACAATGAACGGCATTTCATCTCACACGTATTAGCCTTTTTTGCC 4095152 Query 43868 GCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTA 43927 || || || || || ||||| ||||| ||| || || || || || ||| | Sbjct 4095151 GCATCTGATGGTATTGTTAATGAGAATTTAGTTGAACGATTCAGTCAGGAGGTCCAAGTT 4095092 Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 |||| ||||| ||||| ||||| ||||||||||| || || || | ||||| |||||| Sbjct 4095091 ACAGAGGCACGTTGTTTCTATGGATTTCAAATTGCTATGGAGAACGTGCATTCCGAAATG 4095032 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGA-TTGTTTAA 44046 || ||| | | || ||||| || || || ||| | | | ||| | | | || || || Sbjct 4095031 TATAGTATATTAATCGATACATATATTAAGGATTCGAAACA-AAGGAACTATTTATTCAA 4094973 Query 44047 TGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA 44106 ||| || ||||| | ||||| | || | ||| ||||| ||||| ||| ||||| Sbjct 4094972 TGCTATTGAAACGATGCCTGCCGTAAAGCGTAAGGCAGATTGGGCACTTGCTTGGATTTC 4094913 Query 44107 TTCAAA---TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTT 44163 ||||| | ||||| ||||| | | || ||||||| ||||||||| |||| Sbjct 4094912 CTCAAAGTCGGCAAACTTTGGTGAACGTGTAATTGCATTTGCAGCTGTGGAAGGTATTT- 4094854 Query 44164 CTTTTCA--GGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGG 44221 |||||| ||| |||||| | || || ||| | || ||||| ||||| |||||||| Sbjct 4094853 -TTTTCAGTGGAAGTTTTGCGTCGATCTTCTGGCTTAAAAAACGTGGTTTAATGCCTGGC 4094795 Query 44222 TTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 || |||||||| |||||| |||| || || || || | ||||| ||||| || || Sbjct 4094794 TTAACGTTTTCCAATGAGCTAATCTCACGAGACGAGGGTCTGCATTGTGATTTCGCATGT 4094735 Query 44282 TTGTTACTTGGATATCTAGGAGACGATAAGCC--TTCATGTAAGACAATTACAGATATTG 44339 ||| | || | || | || || | ||||| | ||| | | ||||| || || Sbjct 4094734 TTGATGTTTCAACATTT--GATAC-AGAAGCCAAGTAATGAACG--AATTATTGAAATCA 4094680 Query 44340 TTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAA 44399 || || || || || || || |||||||| | || || || || |||||||||| Sbjct 4094679 TTTCCGAAGCTGTTAAAATTGAGCAAGAATTCTTAACTGACGCTTTGCCCGTAAATTTAA 4094620 Query 44400 TAGGAATGAAT 44410 | || |||||| Sbjct 4094619 TTGGTATGAAT 4094609 >seq45 Length=1794600 Score = 197 bits (218), Expect = 1e-45 Identities = 391/570 (69%), Gaps = 8/570 (1%) Strand=Plus/Plus Query 40860 GATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATAT 40919 || ||||||||||| ||||| ||||| || ||||| | ||| |||||||| || || || Sbjct 1449460 GAAGAAGGTGATCTAGGTCCAGTTTACGGTTTTCAATGGCGTCATTTTGGGGCCAAGTAC 1449519 Query 40920 GACACTATGTACTCTGATTATACCAA--TAAAGGAATGGATCAATTACAGTGCGTTATAG 40977 | | || | | | ||| || | | ||| |||||||| | ||| || || Sbjct 1449520 AGGAAT-TGCAAAGACAGT-TACAAAGGTGAGGGAGTGGATCAACTTCAGGAAGTGATTA 1449577 Query 40978 ATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGG 41037 | || || | | | |||| || |||||||| ||| ||| |||||||| || | Sbjct 1449578 ACACAATCAGAAACAATCCAAATGATCGACGTATTATAATGTCTGCGTGGAATCCTGTCG 1449637 Query 41038 ACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAAT 41096 | ||| | ||||| |||| |||||||||| || || || |||| ||| |||| Sbjct 1449638 ATATACCTCAAATGGCTCTGCCCCCTTGTCATT-GTCTTGCACAATTTTTTGTTGCCAAT 1449696 Query 41097 GGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTT 41156 || || |||| |||||||| || ||| | | |||||||||| |||| || || || Sbjct 1449697 GGAGAGTTGTCTTGTCAATTATACCAACGTAGTGCTGACATGGGATTAGGTGTACCATTC 1449756 Query 41157 AACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCT 41216 || || || || || |||| || ||||||||||| ||| |||| || | ||| Sbjct 1449757 AATATTGCATCATACGCGTTGCTTACCTATATGATTGCTCACATTACTGATCTCCGACCA 1449816 Query 41217 GGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTA 41276 || || || || ||||| ||||| |||| ||| |||| | ||||| || ||| || || Sbjct 1449817 GGGGACTTCGTCCACACTTTAGGCGATGCACACGTTTATAACAATCATATCGAGGCGCTA 1449876 Query 41277 ACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTT 41336 |||||||| || || || |||||| | | ||||| | || ||||||| || | | | Sbjct 1449877 ACAGAACAGCTAACGCGTAAACCTCGTGCGTTTCCTAAATTAGTTATTAAGCGTG-AGAT 1449935 Query 41337 GAAA-ACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCC 41395 |||| |||||| |||||| | || |||| || | | |||||||| ||||| Sbjct 1449936 GAAATGCATTGAAGATTTTACTTTTACGGACTTTGAACTTATCAACTACAATCCATACCC 1449995 Query 41396 TAAAATCCACATGGACATGTCTGTATGATA 41425 ||||| ||||| ||| |||| | ||| Sbjct 1449996 AAAAATTTCAATGGAAATGGCTGTTTAATA 1450025 >seq11 Length=3914683 Score = 125 bits (138), Expect = 6e-24 Identities = 234/335 (70%), Gaps = 14/335 (4%) Strand=Plus/Minus Query 19611 TGGAGTACATGACACTGTTGTCAATCAACTCCT-GTCAAAATTAGACGGTGTTAACCAAC 19669 ||| ||||| ||||| || ||||||||| | || | ||||||| || ||||| | || Sbjct 431127 TGGCGTACACGACACAGTGGTCAATCAATTGCTCGCCAAAATT-GATGGTGTCGAACAGT 431069 Query 19670 TGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTAT 19729 |||| || || || || || |||||||| || |||| || | || ||| || ||| Sbjct 431068 TGAACAACATATTGGTGATCGGCATGACAAACAGACGTGACATGATTGACGAAGCTCTAT 431009 Query 19730 TACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTG 19789 | ||||||||||| || || | | || || || | || ||| | ||| ||||||| Sbjct 431008 TGCGACCCGGTCGCTTAGAGGTGCAAATGGAGATCAGTTTGCCCAACGAAGAGGGACGTG 430949 Query 19790 TGGAAATTTTAAACATACATACATCAACC--ATGCGACAA---AATAACCTTTTAAATGA 19844 || ||||| |||| |||||||| || | ||||| || ||||| || | Sbjct 430948 TGCAAATTCTAAATATACATAC--GAAGCGTATGCGTGAATTTAATAAGATT---GCCGG 430894 Query 19845 CGATGTAGATCTAGAA-GAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTG 19903 |||||| || || ||| |||||||| || || || |||| ||| || || || || | Sbjct 430893 CGATGTTGA-CTCGAAGGAAATTGCCACGTTAACGAAGAACTTTAGTGGTGCCGAGCTGG 430835 Query 19904 AGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 |||| || ||| | || || ||||| | ||||||| Sbjct 430834 AGGGTTTGGTGCGTGCAGCACAATCTACTGCAATG 430800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397429009259860