Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_027916.2 Length=160358 Score E Sequences producing significant alignments: (Bits) Value seq45 105 7e-18 >seq45 Length=1794600 Score = 105 bits (116), Expect = 7e-18 Identities = 179/252 (71%), Gaps = 8/252 (3%) Strand=Plus/Minus Query 31156 TCGATGTGATTGACATAAATATGCGCATCGCCAATAGAGTGTACCAATTCCCCTGGTCTT 31215 ||||| |||||| ||||| || |||||||| | || ||| || || |||||||||| Sbjct 1449869 TCGATATGATTGTTATAAACGTGTGCATCGCCTAAAGTGTGGACGAAGTCCCCTGGTCGG 1449810 Query 31216 AGATGGGTCAATTTG-GCAATCACAT--GAACCAAAAGCGCATAACTCGCTATGTTGAAT 31272 |||| || ||| || ||||||| || | | || ||| || | || || |||||| Sbjct 1449809 AGATCAGT-AATGTGAGCAATCATATAGGTAAGCAACGCGTATGAT--GCAATATTGAAT 1449753 Query 31273 GGTACACCCAATCCCAAATCGGCAGATCGTTGATATAACAAACAGGAAAGTTCATCTCCG 31332 |||||||| ||||||| || ||| ||||| ||||| ||| || | || | | Sbjct 1449752 GGTACACCTAATCCCATGTCAGCACTACGTTGGTATAATTGACAAGACAACTCTCCATTG 1449693 Query 31333 GTCACGTAAAATTG-AAATAACACATGACAAGGCGGCAAAGCCATTTCACAGGTATCGAC 31391 | || ||||||| | ||| ||||||||| |||| |||||||| | ||||||| Sbjct 1449692 GCAACAAAAAATTGTGCAAGACA-ATGACAAGGGGGCAGAGCCATTTGAGGTATATCGAC 1449634 Query 31392 GGGATTCCAAGC 31403 |||||||| || Sbjct 1449633 AGGATTCCACGC 1449622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512981868324160