Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq71 340 2e-88 seq10 123 2e-23 seq558 107 2e-18 seq48 95.1 1e-14 >seq71 Length=1348405 Score = 340 bits (376), Expect = 2e-88 Identities = 1034/1577 (66%), Gaps = 37/1577 (2%) Strand=Plus/Plus Query 130399 GCCACTGTTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATA 130458 || ||| || || || |||||||| || ||||| | || ||||| ||||| || ||||| Sbjct 494633 GCGACTTTTGTCAACTGTGAATTGTATAGCATTTGCTGCTGGCTTCGTGCGTAAGTAATA 494692 Query 130459 CATGCCTGTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGG-- 130516 |||||| ||||||||||| ||| |||||| ||| || | | | ||| Sbjct 494693 CATGCCCGTTTTGAGTCCTGCTTTCCAACCATAAAAGTGTATAGAGGTGA--GCTTGCCA 494750 Query 130517 TAATTGGGTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTG 130576 || ||||| | |||||| ||| |||| |||||| |||||| || || ||||| | Sbjct 494751 TAGTTGGGCTCGGCCACGTGTATATTGAACGATTGGCTTTGATCGATGAATGCGCCACGA 494810 Query 130577 TCTGCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCC 130636 ||||||||||| | || |||||| | ||||||||| | |||||||| ||||| Sbjct 494811 TCTGCAGCCATTTTGATGGAGGTTTTCACTGAAATCTCCCAAACAGTCTTGTACAGATCG 494870 Query 130637 CTAATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACC--GTTGTTGGCTATAATTT 130694 | || ||||| |||||| |||| ||| | ||| | ||| | |||||| Sbjct 494871 CGTATATGTTTCGGTATGGTTTCAATGTTTTGTATAGAACCACGATGT--GTTATAATGG 494928 Query 130695 CGTTGCGCATACTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTAT 130754 || |||| | ||| |||| || | || ||||| || ||| |||| || Sbjct 494929 TATTTTTCATATCATCATCCCACAAACCCAACTCGGTGAGATCGCGTAACAAGTGATGAT 494988 Query 130755 TAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTT 130814 | | | ||| || ||||| | || || || | ||||| || ||| |||||| Sbjct 494989 TGACAACTTGGAATTCACCCGAAAGCACACGACGTGTATAAATATTCGAAGTGTACGGTT 495048 Query 130815 CAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTA 130874 |||| || || || ||||| | |||||||| |||| || || ||||| ||| | | Sbjct 495049 CAAACGACTCATTATTGCCCATAATTTGTGCGGTAGAAGCAGTTGGCATCGGTGCAAGCA 495108 Query 130875 ATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATA 130934 | | || || || | ||| || | | ||||| ||||||||| ||| | ||| | Sbjct 495109 ACAATGAGTTGCGTACACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAGTTCCAGA 495168 Query 130935 GAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGAC 130994 || || || | || | |||||| ||| |||||||||| || || ||| | || Sbjct 495169 GATCAGTTGGCGTT---TTATCCCACATGTCATATTGTAGTATACCCTTGCTGACTGG-- 495223 Query 130995 TGGA--TTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAA 131052 || | ||| | | ||||| | || | ||||| || || |||||||| Sbjct 495224 TGAACCTTCATATGTCTCGTAAGTGCCATATTTTTCAGCCAATTCACAACTGGCTTCCAA 495283 Query 131053 AGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTC 131112 || || || ||||| |||||| ||||||| ||| || | || | | || || Sbjct 495284 TGCGCCATAGTAAATAGTTTCGAATATTTGTTGATTCAACAAGTATGCCTCATCACTTTC 495343 Query 131113 GTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGG 131172 ||| ||||| ||||||||| || ||||| || | ||| ||||| |||| || | || Sbjct 495344 GTATGGAAAACGCATTAAAATTAAGGCGTCGGCAAAACCTTGTATGCCAATACCAATGGG 495403 Query 131173 TCTATGTTTTAAATTACATTTACGCGAACATTCGGT--GGGATAAAGGTTAATGTCAATT 131230 | |||| ||||| |||| | | | |||| ||||||| | || | ||| || Sbjct 495404 ACGATGTCGCAAATTCGATTTCTTGG--CCTCCGGTAAGGGATAATGATTGACGTCTATG 495461 Query 131231 ATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAA-TCAAA 131289 |||||||| ||||| ||| ||||||| |||||| ||| || || ||| ||| | Sbjct 495462 ATTTTGTTCAAATTACGCGTAACAATTTTTGTGACTTCTTT-AAGCCGTTTAAAGTCATA 495520 Query 131290 CGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGC 131349 ||| | || | | ||| | || | |||||| || | ||| ||||| || Sbjct 495521 CGTTTTA---TCTGGTGTGACATACATGTTCAATGCTATTGAGGCTAAATTGCAAACAGC 495577 Query 131350 CGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGT 131409 ||||| || |||| | ||||||||||| ||||||||||| | || || || Sbjct 495578 TACCTCGTCGGGTGCGGAATATTCAACAATTTCGGTACACAAATTACTACATTTAATCGT 495637 Query 131410 GCCCAAATTTTGTTGATTGCTTTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGT 131469 ||| | ||| || ||||| || || ||| | || || |||| |||||| || || Sbjct 495638 GCCAATATTCTGCTGATTACTCTTTCTATTGCAAGCATCTTTATACAACATGTACGGTGT 495697 Query 131470 GCCCGTTTCGACTTGAGTTTCAATAATGT--ATCGAAAGAGTTTTCGAGCAGACAATTGA 131527 ||| || || || || | |||||||||| | | ||||| ||| | || || Sbjct 495698 GCCGGTCTCTACCTGCGATTCAATAATGGCAAACCAAAGACTTTGTGCTTTAACC-TTCT 495756 Query 131528 TATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCC--AA 131585 |||| | | | || || ||| || || || || || | || || | || || | Sbjct 495757 TATTAGCAC-GTCCTTCTTGTTCATATTTCTCATATAATTTCTCGAACTCTTCACCCCAT 495815 Query 131586 ACGAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTT 131645 || ||| ||| ||||| | ||||||||||||||||| | | | || Sbjct 495816 ACTTCATGT--AAACCCGGACACTTATGTGGACACATTAGCGACCAGTCTTCATCGGCTT 495873 Query 131646 CAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTT 131705 | || || |||||| | |||||| | ||| || || || || | |||||| || | Sbjct 495874 CGACACGTCGCATAAATAGATCCGGTATCCACAAGGCATAGAATAAATCTCTTGCGCGAT 495933 Query 131706 TCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGG 131765 ||||||| | || || |||| ||||||| ||||| || |||| |||||||||||| | Sbjct 495934 GCTCTTCTTTGCCAGTATTTTTCTTCAAATCCAAAAACTCGAAAACGTCCGCATGCCATG 495993 Query 131766 GTTCCAAATACACTGCCATTGCGCCTTTGCGCTTACCG---CCTTGATTAACATGACGAA 131822 |||||| ||| | || | ||||| ||||||||| ||||||| ||||| ||| Sbjct 495994 GTTCCAGATAGATGGCAAAGGCGCCGGGACGCTTACCGCCACCTTGATCAACATAACGTG 496053 Query 131823 CCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCT 131882 ||| || || | || | || ||| ||| | ||||| |||| | ||||| || | | Sbjct 496054 CCACATTATTAAACACTCTCAGCATTGGCACTAAACCATTGGAAGTGCCATTTGTACCCG 496113 Query 131883 TAA-TGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTAT 131941 || || || |||| || || | || || || || | |||||||| || | || Sbjct 496114 CAATTGCAG-TGCCTTTCGCGCGTATGCAATGCACATTCAAACCAATACCGCCTGCAGAT 496172 Query 131942 TTAGAGATTAGTGCGCA 131958 || ||||| | ||| || Sbjct 496173 TTGGAGATCAATGCACA 496189 >seq10 Length=3877145 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||||||||||||| | || || || ||||| ||||||||||| || | |||| || Sbjct 2845260 CGCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAGTCCGACAGGGTGCGTCCG 2845201 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || | ||||||||||| | || | ||| |||||||| || || | ||||| ||| Sbjct 2845200 TCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCCTCCTTA 2845141 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| || | | || | ||| || | | |||||||| | ||||| Sbjct 2845140 TCTTGGATTTTGGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACTTCCAAGGTTATG 2845081 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || ||||| || |||||||||||||||||| Sbjct 2845080 GTTTTACCGGTCAGGGTCTTCACAAAGATTTGCATA 2845045 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||||||||| || | || || || ||||| || ||||||||| || |||| || Sbjct 2845032 CGCAATACCAAGTGAAGTGTTGACTCCTTTTGGATGTTGTAGTCGGACAATGTGCGTCCG 2844973 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || | || || || ||| |||| | ||| |||||||| || || | ||||||||| Sbjct 2844972 TCCTCCAATTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGGGGAATACCCTCTTTG 2844913 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || || || ||| | | |||| | || || | | |||||| || ||||| || Sbjct 2844912 TCTTGAATTTTTGCTTTAACGTTTTCGATTGTATCAGAAGGTTCAACCTCCAGAGTAATT 2844853 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| ||||||| ||||| || |||||||||||| Sbjct 2844852 GTTTTTCCCGTCAATGTTTTAACGAAGATTTGCATA 2844817 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | |||||||||||||| | || || || ||||| || ||||| ||| Sbjct 2845502 TGCCACCACGGAGACGCAATACCAAATGAAGGGTTGATTCCTTTTGGATGTTGTAATCGG 2845443 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | || |||| || | ||||||||||| | || | ||| |||||||| || | Sbjct 2845442 ACAAAGTACGTCCGTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTG 2845383 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| ||||| |||||| || | | |||| | ||||| | | ||| | Sbjct 2845382 GGATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTTTCGATGGTGTCGGATGGTTCGA 2845323 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || | ||| |||| ||| || || || || ||||| |||||||||||| Sbjct 2845322 CCTCCAAAGTAATAGTTTTACCAGTAAGGGTCTTCACGAAGATTTGCATA 2845273 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||||| || || || || ||||| ||| || | | || ||||||| Sbjct 2844570 ACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAAGGTACGTCCGTCTTCC 2844511 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || ||||||||||| | || | ||| |||||||| || || | || ||||| || Sbjct 2844510 AGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCCTGA 2844451 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | |||| | ||| || | | |||||| || ||||| || | ||| Sbjct 2844450 ATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTG 2844391 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| || ||||| ||||||||||| Sbjct 2844390 CCAGTCAAGGTCTTCACGAAGATTTGCAT 2844362 >seq558 Length=79715 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 || || ||||| ||||| || || ||||| |||||||| || |||| ||| | || || Sbjct 66390 ACTAAGTGTAATGTAGACTCCTTCTGAATGTTGTAGTCTGCCAATGT-GCGACCATCCTC 66332 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | ||||| ||||| |||| | |||||||||||| || || | || || ||||| Sbjct 66331 CAATTGTTTTCCGGCAAAAATTAAACGCTGTTGATCTGGTGGAATCCCTTCCTTATCTTG 66272 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||| ||| ||| | ||| | ||| || | | |||||| || ||||| || | ||| Sbjct 66271 GATTTTGGCTTTAACATGTTCGATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTTTT 66212 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGC 27250 ||||| || ||||| || || |||||||| || Sbjct 66211 ACCCGTAAGGGTTTTTACGAAAATTTGCATTGC 66179 >seq48 Length=1730007 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| |||||||| | || || || ||||| || ||||||||| || | |||| | Sbjct 776886 CGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCA 776827 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||||| |||||| | || | |||||||||||| || || | ||||||||| Sbjct 776826 TCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATACCCTCTTTG 776767 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTAT 27211 || || || ||| | |||| | ||||| | |||| || || |||| || || Sbjct 776766 TCTTGAATTTTAGCTTTGACATTTTCGATGGTGTCAGATGGC-TCGACCTCTAAGGTGAT 776708 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || | ||||| || || || ||||| Sbjct 776707 GGTCTTACCAGTTAATGTTTTGACGAAAATCTGCAT 776672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424905543236064