Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq71 150 2e-31 seq162 105 8e-18 >seq71 Length=1348405 Score = 150 bits (166), Expect = 2e-31 Identities = 467/711 (66%), Gaps = 25/711 (4%) Strand=Plus/Plus Query 110720 GTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 110779 ||||| |||||||| | |||||||| |||| ||||||||||| || || |||||||| Sbjct 495039 GTGTACGGTTCAAACGACTCATTATTGCCCATAATTTGTGCGGTAGAAGCAGTTGGCATC 495098 Query 110780 GGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCC 110839 ||||| | ||| | ||| || | ||| | | ||| || ||||| | | | Sbjct 495099 GGTGCAAGCAACAATGAGTTGCGTACACCATGTTGCTTTATTTTCTCCTTCAATTCGGTC 495158 Query 110840 CAGT--CGTAGTTGAGCTTG-GTTTCACCTTCCCACATGTCAAACTGAAGCAC-CCCTTG 110895 |||| | || | || | | |||| | |||||||||||| | || || | |||||| Sbjct 495159 CAGTTCCAGAGATCAGTTGGCGTTTTA---TCCCACATGTCATATTGTAGTATACCCTTG 495215 Query 110896 G-GACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 110954 ||| || ||||| ||| | || || || | || | ||||||||||||||| | Sbjct 495216 CTGACT--GGTGAACCTTCATATGTCTCGTAAGTGCCATATTTTTCAGCCAATTCACAAC 495273 Query 110955 TCGCCTCCAGGGATGCGTGATAC---ATGGTTTCAAAGATACGAGCATTCATCTCCTTGG 111011 | || |||| ||||| ||| || ||||| || || | ||||| | | | Sbjct 495274 TGGCTTCCA---ATGCGCCATAGTAAATAGTTTCGAATATTTGTTGATTCAACAAGTATG 495330 Query 111012 CTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACAC 111071 | ||||| || ||| | || ||||| || | || || | |||||| | | Sbjct 495331 CCTCATCACTTTCGTATGGAAAACGCATTAAAATTAAGGCGTCGGCAAAACCTTGTATGC 495390 Query 111072 CCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAA 111128 | | |||||| || | ||||||| ||| || |||| | | ||| | ||||||| Sbjct 495391 CAATACCAATGGGACGATGTCGCAAATTCGA-TTTCTTG--GCCTCCGGTAAGGGATAAT 495447 Query 111129 AATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTT 111188 ||| ||| |||| | ||| | ||| |||||||| ||||||| ||| | ||| Sbjct 495448 GATTGACGTCTATGATTTTGTTCAAATTACGCGTAACAATTTTTGTGACTTCTTTAAGCC 495507 Query 111189 TTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCA 111248 || | | ||| | || | ||| |||||||| | | || ||||| || | Sbjct 495508 GTTTAAAGTCATACGTTTTA---TCTGGTGTGACATACATGTTCAATGCTATTGAGGCTA 495564 Query 111249 AATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGG 111308 ||||||||||||| ||| || | | || || | |||||| ||||| || || Sbjct 495565 AATTGCAAACAGCTACCTCGTCGGGTGCGGAATATTCAACAATTTCGGTACACAAATTAC 495624 Query 111309 AACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGA 111368 || |||||||| || | ||||| || |||||||| | ||||| ||||| || || | Sbjct 495625 TACATTTAATCGTGCCAATATTCTGCTGATTACTCTTTCTATTGCAAGCATCTTTATACA 495684 Query 111369 GCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 |||||| || || || ||||| ||| |||| | ||| || ||||| Sbjct 495685 ACATGTACGGTGTGCCGGTCTCTACCTGCGATTCAATAATGGCAAACCAAA 495735 >seq162 Length=508180 Score = 105 bits (116), Expect = 8e-18 Identities = 284/430 (66%), Gaps = 16/430 (4%) Strand=Plus/Minus Query 181624 AACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAA 181683 |||| || || ||||| || | |||||||| | ||||||||||| | | || || || Sbjct 426177 AACCGGTGCCAATACCATCAGCACCATTCACTAAAACCATTGGTATAATCGGTATATACC 426118 Query 181684 AGTCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743 | | |||||||| | |||||||| | ||| |||| | || ||||| || Sbjct 426117 ACTGGGGTTCAATCTTTTGGCCATCATCAACTTCGTATGTGAGCAATGGATCATCGGCAG 426058 Query 181744 GATCAAAGATCTTGCGAGCCTCCTT---GGTAAGTTTT--GTGAAGATATACCT--CGTT 181796 | | || || ||| ||| || || | || ||||| ||||| | || | Sbjct 426057 GGTGGAATAT-----GAGTCTCGTTAATGGCGACATTAAAGTGAAAATATAACGAGCGCT 426003 Query 181797 TG-AGAAGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAG 181855 | | || |||||||||||| ||||||||||| || ||||||| ||||| || | Sbjct 426002 CGCACAA---TCTTTACCACCCTGTAGACGCGTACCGAACTGACCACGCGGCTCGAGTAA 425946 Query 181856 GTTAATGTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGA 181915 ||||| || ||||| || ||||| | ||||| || || ||||| || || || Sbjct 425945 ATTAATATTATTTGAGCCAACATAGTTTTGCGCCAAATTGACTATGGTGGCCTGCAGTGA 425886 Query 181916 CACTTCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTT 181975 || || || || ||||| || ||| | || || ||| | | | ||| || || || || Sbjct 425885 CATCTCTCCATGATGGTAGGCGGACATTTCAGCCACAGAACCAGACAATTGCGCAACTTT 425826 Query 181976 CATTTCATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTT 182035 || |||| |||| ||| | ||| || | |||| ||||| | || |||||| Sbjct 425825 CACTTCACGTTTGTCGTTACGCTTGAAACAGGTGAACATAACTTTGCGTTGGCCAGGCTT 425766 Query 182036 GAGACCATCC 182045 | ||||||| Sbjct 425765 AAAACCATCC 425756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627988257571200