Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq162 98.7 1e-15 >seq162 Length=508180 Score = 98.7 bits (108), Expect = 1e-15 Identities = 185/270 (69%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||||||||| ||||||| ||| ||| ||| || ||||| |||||||||||||| || Sbjct 426023 AGTGAAAATATAACGAGCGCTCGCACAATCTTTACCACCCTGTAGACGCGTACCGAACTG 425964 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 |||| |||||| | | || | || || | ||| ||| ||||||| ||||| ||||| Sbjct 425963 ACCACGCGGCTCGAGTAAATTAATATTATTTGAGCCAACATAGTTTTGCGCCAAATTGAC 425904 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 || || | || || | ||| ||||| || || || | | || ||||| | || Sbjct 425903 TATGGTGGCCTGCAGTGACATCTCTCCATGATGGTAGGCGGACATTTCAGCCACAGAACC 425844 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGACGTCAG--GTTCTTCTTGAGGCAGGCATAAATC 117541 | || || || || |||| || |||| | ||| ||||| |||| | || Sbjct 425843 AGACAATTGCGCAACTTTCACTTC--ACGTTTGTCGTTACGCTTGAAACAGGTGAACATA 425786 Query 117542 ACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 || ||||| || | ||||| | ||||||| Sbjct 425785 ACTTTGCGTTGGCCAGGCTTAAAACCATCC 425756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547177886405600