Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq10 170 2e-37 seq48 145 9e-30 seq558 141 1e-28 seq162 102 9e-17 >seq10 Length=3877145 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| || ||||| || || || || | || |||||| | Sbjct 2845046 ATGCAAATCTTTGTGAAGACCCTGACCGGTAAAACCATAACCTTGGAAGTTGAGCCTTCC 2845105 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | ||||| ||||| || || |||||||| ||||| ||||| || Sbjct 2845106 GATACTATTGAGAATGTTAAGGCCAAAATCCAAGATAAGGAGGGCATTCCACCAGATCAA 2845165 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || ||||| ||||| ||| | ||||| | || ||||| | ||||| ||| Sbjct 2845166 CAACGTTTGATCTTTGCCGGTAAACAATTGGAGGACGGACGCACCCTGTCGGACTACAAT 2845225 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| ||||||||| | || |||||||| || ||||| Sbjct 2845226 ATCCAAAAGGAATCAACTCTTCATTTGGTATTGCGTCTCCGTGGTGG 2845272 Score = 159 bits (176), Expect = 4e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| | || |||||||| || ||||| |||||||| || Sbjct 2844361 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCATC 2844420 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| |||| | || ||||| ||||||||||| || ||||| || ||||| || Sbjct 2844421 CGATACTATTGAAAATGTTAAAGCTAAGATTCAGGACAAAGAAGGAATCCCCCCAGATCA 2844480 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| |||| ||||| ||||| ||||| || || | |||||| | | || || || Sbjct 2844481 ACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGTACCTTGTCCGATTACAA 2844540 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || |||||| | || | ||||| || ||||| Sbjct 2844541 CATCCAGAAGGAGTCTACACTTCATTTGGTTCTTCGTCTACGTGGTGG 2844588 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| ||||| || || ||||||||| | ||||| || || Sbjct 2845274 ATGCAAATCTTCGTGAAGACCCTTACTGGTAAAACTATTACTTTGGAGGTCGAACCATCC 2845333 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | |||||||| || || || ||||||||||| || ||||| || Sbjct 2845334 GACACCATCGAAAACGTTAAGGCTAAGATCCAAGATAAGGAGGGAATCCCACCAGATCAA 2845393 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || ||||| ||||| ||| | ||||| | ||||| | | || || || Sbjct 2845394 CAACGTTTGATCTTTGCCGGTAAACAATTGGAGGACGGACGTACTTTGTCCGATTACAAC 2845453 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| || |||||| | || |||||||| || ||||| Sbjct 2845454 ATCCAAAAGGAATCAACCCTTCATTTGGTATTGCGTCTCCGTGGTGG 2845500 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || | || || || || |||||||| |||||||| | | Sbjct 2844818 ATGCAAATCTTCGTTAAAACATTGACGGGAAAAACAATTACTCTGGAGGTTGAACCTTCT 2844877 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | || || |||||||| ||||| ||||| ||||| ||||| || Sbjct 2844878 GATACAATCGAAAACGTTAAAGCAAAAATTCAAGACAAAGAGGGTATTCCCCCAGATCAA 2844937 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| ||||||| ||||| |||||| | ||||| | || || | | ||||| || Sbjct 2844938 CAACGTTTAATTTTCGCTGGCAAGCAATTGGAGGACGGACGCACATTGTCCGACTACAAC 2844997 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || ||||| | || |||||||| || ||||| Sbjct 2844998 ATCCAAAAGGAGTCAACACTTCACTTGGTATTGCGTCTCCGTGGTGG 2845044 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||| || | || || || || || ||| | ||||||||| | Sbjct 2844590 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 2844649 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | || ||||||||||| || ||||| ||||| || ||||| || Sbjct 2844650 GATACTATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAA 2844709 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | ||||| ||||| || || | ||||||| || || || | ||||||||| Sbjct 2844710 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 2844769 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||| | ||| |||| | || | || ||||| Sbjct 2844770 ATTCAGAAGGAATCCACATTACATTTAGTTCTACGCTTACGTGGTGG 2844816 Score = 102 bits (112), Expect = 9e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 |||||||| || || || |||||||| ||||| ||||| || ||||| | || || || Sbjct 2846965 AAGGCTAAGATCCAAGATAAGGAGGGTATTCCACCAGATCAACAGCGATTGATCTTCGCC 2847024 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| || ||||||| ||||| | | ||||| ||| | || |||||||| || Sbjct 2847025 GGCAAGCAGCTTGAGGATGGACGTACTTTGTCCGACTACAATATACAGAAGGAATCGACA 2847084 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || | ||||||||||| || Sbjct 2847085 CTCCATTTGGTGCTACGTCTTCGCGGAGG 2847113 >seq48 Length=1730007 Score = 145 bits (160), Expect = 9e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || ||||| || | || || ||||| || || | ||||| ||| || Sbjct 776671 AATGCAGATTTTCGTCAAAACATTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCATC 776730 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | |||| | || ||||||||||| ||||| ||||| || || ||||| || Sbjct 776731 TGACACCATCGAAAATGTCAAAGCTAAAATTCAAGACAAAGAGGGTATCCCACCAGATCA 776790 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| | || || || || || ||| | || |||| ||| ||| | | ||||| || Sbjct 776791 ACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAA 776850 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || || ||| | || ||||||||||| ||||| Sbjct 776851 CATCCAAAAGGAGTCAACCCTCCATTTGGTGTTGCGTCTTCGTGGTGG 776898 >seq558 Length=79715 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || ||||| || || || || |||||||||||||| | Sbjct 66181 AATGCAAATTTTCGTAAAAACCCTTACGGGTAAAACCATCACTCTTGAGGTTGAACCTTC 66240 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | | || | || || ||||| || || ||||| || ||||| ||||| || Sbjct 66241 GGATACTATCGAACATGTTAAAGCCAAAATCCAAGATAAGGAAGGGATTCCACCAGATCA 66300 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| |||||||||| || || ||| | ||||||| ||| || | |||||||| || Sbjct 66301 ACAGCGTTTAATTTTTGCCGGAAAACAATTGGAGGATGGTCGCACATTGGCAGACTACAA 66360 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || | || ||||| | |||||| | ||||| Sbjct 66361 CATTCAGAAGGAGTCTACATTACACTTAGTCCTTCGTCTTAGAGGTGG 66408 >seq162 Length=508180 Score = 102 bits (112), Expect = 9e-17 Identities = 271/412 (66%), Gaps = 4/412 (1%) Strand=Plus/Plus Query 31993 AAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCGA--GTGACA 32050 |||||| || ||||| || || | | |||| ||||| ||| | | | |||| Sbjct 425766 AAGCCTGGCCAACGCAAAGTTATGTTCACCTGTTTCAAGCGTAAC--GACAAACGTGAAG 425823 Query 32051 TGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGG 32110 |||| || ||||| |||| || | ||||| || | ||||| || || || ||| Sbjct 425824 TGAAAGTTGCGCAATTGTCTGGTTCTGTGGCTGAAATGTCCGCCTACCATCATGGAGAGA 425883 Query 32111 CGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGA 32170 ||| || |||| |||||| ||||| | || || |||| ||| || ||||||| | | Sbjct 425884 TGTCACTGCAGGCCACCATAGTCAATTTGGCGCAAAACTATGTTGGCTCAAATAATATTA 425943 Query 32171 ACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGA 32230 | ||||||||||| ||| ||||| || || || || ||||| || ||| ||||| Sbjct 425944 ATTTACTCGAGCCGCGTGGTCAGTTCGGTACGCGTCTACAGGGTGGTAAAGATTGTGCGA 426003 Query 32231 GCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGG 32290 || | ||||| || ||||| | | || | ||| | || ||| |||| | | Sbjct 426004 GCGCTCGTTATATTTTCACTTTAATGTCGCCATTAACGAGACTCATATTCCACCCTGCCG 426063 Query 32291 ACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACA 32350 | ||| | |||||| ||| | ||||||| || || | | || || || || | Sbjct 426064 ATGATCCATTGCTCACATACGAAGTTGATGATGGCCAAAAGATTGAACCCCAGTGGTATA 426123 Query 32351 GTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGG 32402 ||| | | || ||| | || ||||| ||||| || || || || || || Sbjct 426124 TACCGATTATACCAATGGTTTTAGTGAATGGTGCTGATGGTATTGGCACCGG 426175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570270677880640