Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq48 176 4e-39 seq10 163 2e-35 seq154 154 1e-32 seq558 136 3e-27 >seq48 Length=1730007 Score = 176 bits (194), Expect = 4e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| | || || ||| | || || | || || || || || Sbjct 776672 ATGCAGATTTTCGTCAAAACATTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCATCT 776731 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| ||||||||||||||||| || || ||||| |||||| Sbjct 776732 GACACCATCGAAAATGTCAAAGCTAAAATTCAAGACAAAGAGGGTATCCCACCAGATCAA 776791 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| |||||||||||||| || ||| | ||||| |||||| Sbjct 776792 CAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAAC 776851 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | |||||||| |||||| | || ||||| || Sbjct 776852 ATCCAAAAGGAGTCAACCCTCCATTTGGTGTTGCGTCTTCGTGGTGGTAT 776901 >seq10 Length=3877145 Score = 163 bits (180), Expect = 2e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| |||||| | || ||||| || || ||||| ||| Sbjct 2844362 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCATCC 2844421 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || ||||| ||||||||||| || || || |||||| Sbjct 2844422 GATACTATTGAAAATGTTAAAGCTAAGATTCAGGACAAAGAAGGAATCCCCCCAGATCAA 2844481 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | ||||| |||||| |||||||| | ||| | |||||||||||| Sbjct 2844482 CAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGTACCTTGTCCGATTACAAC 2844541 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||||||||| | ||| | || ||||| || Sbjct 2844542 ATCCAGAAGGAGTCTACACTTCATTTGGTTCTTCGTCTACGTGGTGGTAT 2844591 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| |||| || || | |||||||| || || ||||| || Sbjct 2844818 ATGCAAATCTTCGTTAAAACATTGACGGGAAAAACAATTACTCTGGAGGTTGAACCTTCT 2844877 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| |||||||||||||||||| || || || || |||||| Sbjct 2844878 GATACAATCGAAAACGTTAAAGCAAAAATTCAAGACAAAGAGGGTATTCCCCCAGATCAA 2844937 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | ||| ||||| |||||||| ||| | || | ||||| |||||| Sbjct 2844938 CAACGTTTAATTTTCGCTGGCAAGCAATTGGAGGACGGACGCACATTGTCCGACTACAAC 2844997 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | || ||||| |||||| | || ||||| || Sbjct 2844998 ATCCAAAAGGAGTCAACACTTCACTTGGTATTGCGTCTCCGTGGTGGTAT 2845047 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||| |||| || || | || ||| | || || || || ||| Sbjct 2844590 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 2844649 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| |||||| ||||||||||| || ||||| || ||||| |||||| Sbjct 2844650 GATACTATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAA 2844709 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| |||||||| ||||| || | || | ||||| || || Sbjct 2844710 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 2844769 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || || |||||||| ||| | || || || ||||| || Sbjct 2844770 ATTCAGAAGGAATCCACATTACATTTAGTTCTACGCTTACGTGGTGGTAT 2844819 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || || || |||||||| | || || ||||| ||| Sbjct 2845274 ATGCAAATCTTCGTGAAGACCCTTACTGGTAAAACTATTACTTTGGAGGTCGAACCATCC 2845333 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || ||||| || || || || ||||| |||||| Sbjct 2845334 GACACCATCGAAAACGTTAAGGCTAAGATCCAAGATAAGGAGGGAATCCCACCAGATCAA 2845393 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||||| ||||||||||| ||| | || | |||||||||||| Sbjct 2845394 CAACGTTTGATCTTTGCCGGTAAACAATTGGAGGACGGACGTACTTTGTCCGATTACAAC 2845453 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || ||| | |||||||| |||||| | || |||||||| Sbjct 2845454 ATCCAAAAGGAATCAACCCTTCATTTGGTATTGCGTCTCCGTGGTGGCAT 2845503 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||||||| || | || || | ||||| || || ||| Sbjct 2845046 ATGCAAATCTTTGTGAAGACCCTGACCGGTAAAACCATAACCTTGGAAGTTGAGCCTTCC 2845105 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||||| ||||| || || ||||| ||||| |||||| Sbjct 2845106 GATACTATTGAGAATGTTAAGGCCAAAATCCAAGATAAGGAGGGCATTCCACCAGATCAA 2845165 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||||| ||||||||||| ||| | ||| | || || ||||| Sbjct 2845166 CAACGTTTGATCTTTGCCGGTAAACAATTGGAGGACGGACGCACCCTGTCGGACTACAAT 2845225 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || | |||||||| |||||| | || ||||| || Sbjct 2845226 ATCCAAAAGGAATCAACTCTTCATTTGGTATTGCGTCTCCGTGGTGGTAT 2845275 >seq154 Length=581927 Score = 154 bits (170), Expect = 1e-32 Identities = 256/363 (71%), Gaps = 10/363 (3%) Strand=Plus/Minus Query 135295 TGAAGAGTGTCTAGTGCGCCGCGAATTGGCGGACAATTTTTGTTATTATAACAAACATTA 135354 |||||| | |||| || || ||||||||||| ||||| |||||||| ||| ||||||| Sbjct 260228 TGAAGAAGCTATAGTACGGCGTGAATTGGCGGATAATTTCTGTTATTACAACGAACATTA 260169 Query 135355 TGATTGCATAGAAGGTGCTCCGGCATGGGC-GCAACAAACTTTGCACGCTCACGCCTCTG 135413 ||| | || |||| | || ||||| || | |||| ||| | | ||| | Sbjct 260168 CGATAGTTTAAAAGGCTTACATGCGTGGGCAGCTA-AAACGTTGGAAGATCATCGAAAAG 260110 Query 135414 AT---CGCAGAGACTTTTGTTACACGCGC-GAGCAATGGGACCAAGCGTTGACGCATGAC 135469 || |||| | ||| | |||| || ||| | || || || || ||||| Sbjct 260109 ATAAACGCAC-GCCTTCTTATACATTGGCTGAG---TTTGAGCAGGCTCGAACACATGAT 260054 Query 135470 CCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATG 135529 |||||||||| || || ||| | ||||||||| |||||||| || ||| || Sbjct 260053 GATCTGTGGAACGCAGCGCAGATACAGTTGTTGCGAGAAGGTAAAATGCATGGTTTTCTG 259994 Query 135530 CGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAA 135589 || |||||||||||||||||||| ||||||||||| || | |||| || || ||| || Sbjct 259993 CGTATGTATTGGGCAAAAAAGATTTTGGAATGGTCGGCTACACCTGAAGTTGCTCTAGAA 259934 Query 135590 CACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTA 135649 ||||||||||| |||||| | || ||||| |||||| ||| |||| ||||| || Sbjct 259933 ACTGCAATATTTTTGAATGATAAATATAGTTTGGATGGAATAGATCCAAACGGCTATGTT 259874 Query 135650 GGT 135652 ||| Sbjct 259873 GGT 259871 Score = 98.7 bits (108), Expect = 9e-16 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 135476 TGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATG 135535 ||||| ||| | ||| || || ||| ||||||||||||||||| ||| | || | | Sbjct 256182 TGGAATGCGTCTCAATTACAACTGGTGCGTGAAGGCAAAATGCACGGGTTTCTTCGTAAG 256123 Query 135536 TATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCA 135595 |||||||||||||||||| |||||||||| | || | | |||| || || || Sbjct 256122 TATTGGGCAAAAAAGATACTGGAATGGTCAAATACTCCAGAATCGGCGTTAGAAACAGCC 256063 Query 135596 ATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT 135652 || | ||| || ||| | ||||| ||||| || | ||| | ||||| || || ||| Sbjct 256062 ATTTATTTAAACGATAAATACAGCTTAGACGGCAGAGATCCCAATGGTTATGTGGGT 256006 >seq558 Length=79715 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 || ||||| || || |||||||| || || || || | || |||||||| || ||||| Sbjct 66179 GCAATGCAAATTTTCGTAAAAACCCTTACGGGTAAAACCATCACTCTTGAGGTTGAACCT 66238 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || || | || || || ||| ||||| ||||| || ||||| || ||||| ||| Sbjct 66239 TCGGATACTATCGAACATGTTAAAGCCAAAATCCAAGATAAGGAAGGGATTCCACCAGAT 66298 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 |||||||||||||| | ||||| ||||||||||| || || || | | || ||| Sbjct 66299 CAACAGCGTTTAATTTTTGCCGGAAAACAATTGGAGGATGGTCGCACATTGGCAGACTAC 66358 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| |||||||| || ||||| || || | ||| | | ||||| Sbjct 66359 AACATTCAGAAGGAGTCTACATTACACTTAGTCCTTCGTCTTAGAGGTGG 66408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434888107933440