Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_028700.1 Length=37976 Score E Sequences producing significant alignments: (Bits) Value seq884 506 5e-139 seq641 131 4e-26 >seq884 Length=19560 Score = 506 bits (560), Expect = 5e-139 Identities = 810/1158 (70%), Gaps = 24/1158 (2%) Strand=Plus/Plus Query 15369 ATACTAAATATCGCTTGCAAAGGCGGACGTGGTTCTGGTAAATCATCTAATATTGCTTTT 15428 ||||| ||||| | ||| || || ||||||||||||||||||||||| |||| || | Sbjct 7411 ATACTCAATATTGTTTGTAAGGGTGGACGTGGTTCTGGTAAATCATCAGATATCGCACAT 7470 Query 15429 ATTAT--CTCGAGGTTAATAATACAGTATCCTGTCAATGCGGTTTGTATCCGTAAAACAG 15486 ||||| ||| | ||| | || |||| |||||||||||||| | || || | | Sbjct 7471 ATTATTACTCAA--TTACTTATGAGGTATGCTGTCAATGCGGTTGGCATTCGATATGTTG 7528 Query 15487 ATAATACTCTGGAGCAGTCTGTTTATGAGCAAATTAAATGGGCTATATCTGAGCAAGGGC 15546 ||||||| | || || || | ||||||||||| |||||||| || |||||||| Sbjct 7529 ATAATACATTAGAACAATCAATCTATGAGCAAATGAAATGGGCAATTGAACAGCAAGGGG 7588 Query 15547 TAGAGCGTTACTTTAAATTTAACAAATCACCTCTAAGGATAACGTACATCCCTAGAGGTA 15606 || || | ||||||||||| ||||| || | || || || ||||| ||| | |||| Sbjct 7589 TAACGCATCTATTTAAATTTAATAAATCGCCGTTGAGAATCACATACATACCTCGTGGTA 7648 Query 15607 ATTACATTGTCTTTAGAGGAGCACAAAATCCTGAACGTATCAAGTCCTTAAAAGATAGTC 15666 |||| || | || ||||| || |||||||||||| | |||||||| ||||||||||||| Sbjct 7649 ATTATATGATTTTCAGAGGTGCCCAAAATCCTGAAAGAATCAAGTCTTTAAAAGATAGTC 7708 Query 15667 GTTTTCCTTTTGCTATCGGTTGGATCGAGGAGCTTGCGGAATTTAAAACCGAGGACGAAG 15726 | || || ||||| || || ||||| |||||| | | || |||||||| || || |||| Sbjct 7709 GGTTCCCGTTTGCGATTGGCTGGATTGAGGAGTTAGGCGAGTTTAAAACTGAAGATGAAG 7768 Query 15727 TCAAAACTATCACTAACTCCCTATTGCGTGGGGAACTCGGTGATGGTCTTTTTTATAAAt 15786 | | || || || || || || || ||||| ||| | || |||||||||||||||||| Sbjct 7769 TAACGACCATTACCAATTCACTTTTACGTGGTGAATTAGGAAATGGTCTTTTTTATAAAT 7828 Query 15787 ttttttATACATACAATCCACCTAAACGTAAACAGTCTTGGGTTAACAAAAAATATGAGA 15846 | |||| | ||||| || || |||||| ||| |||||||| ||||| |||||||| | Sbjct 7829 TCTTTTTCAGCTACAACCCGCCAAAACGTCGACAATCTTGGGTGAACAAGAAATATGA-A 7887 Query 15847 GCCAATTT-CAGCCGTCTAATACGTTTGTACACGCATCTACGTATAAAGATAATCCTTTT 15905 | | ||| || || |||||| ||||| || ||||| |||||||||||||||||| Sbjct 7888 TCTAGTTTCCAACCTGATAATACATTTGTTCATCACTCTACTTATAAAGATAATCCTTTT 7947 Query 15906 ATTGCCAAAGAGTTTAT------AGCCGAGGCAGAAGCCACGAGAGAGCGTTCAGAACGT 15959 ||| | | ||| || | || ||||||| || |||| || || | Sbjct 7948 ATTTCGAGAGAATTCTTGAAAGAAGTGGAGGCAG----CAAGAGATAGAAATC--CTTTT 8001 Query 15960 CGTTATCGTTGGGAGTATTTAGGAGAGGCCATTGGTTCGGGTGTTGTTCCATTTGACAAC 16019 ||| | | ||||| || || || || || ||||| || || |||||||| ||| Sbjct 8002 CGTGCTAGATGGGAATACGATGGTGAAGCAATCGGTTCTGGAGTCGTTCCATTCAGTAAC 8061 Query 16020 TTACGCTTCGA------ACGTATTACTGACGAACAAGTAGCCGATTTCGATAATATCCGT 16073 ||| | || |||| ||||| ||| || || | || ||||||||| | Sbjct 8062 TTAAAAGTGGAGAAAGGCTGTATAACTGATGAAATGGTTGCTAACTTTGATAATATCAGA 8121 Query 16074 AACGGTATTGACTATGGTTATGCAACTGACCCGCTTGCTTTTGTACGTTGGCATTATGAT 16133 |||||| |||||| |||||||| ||||| || | || || ||||| ||||| || ||| Sbjct 8122 AACGGTCTTGACTTCGGTTATGCTACTGATCCATTAGCATTCGTACGATGGCACTACGAT 8181 Query 16134 AAAAAGAAAAATGGTATCTATGCTATTGACGAGTATTATGGTCAGAAGATATCAAACAGG 16193 || || || ||||| ||||||||| |||| || ||||| ||| || || | Sbjct 8182 AAGAAAAAGAATGGCATCTATGCTGTTGATGAAATCTATGGAGTGAAAATCAGTAATCGT 8241 Query 16194 CAGCTGGCTAAGTGGTTGACGACTAAAGGATATCAGAGTGATGAGATGTTTGCTGAAAGT 16253 || | || | | || | ||||| |||||| |||| || | || Sbjct 8242 GAGTTTGCCCAAAAGGCGAAAGCAAAAGGTTATCAGTCTGATCGTATTGCATCGGATTCA 8301 Query 16254 GCTGAGCCTAAAAGTAATGCTGAGCTTAAAAACGAGTTTGGCATCAAACGGATAAAAGGC 16313 || || |||||| | || || | || || || || || | | || || Sbjct 8302 GCAGAACCTAAATCCATAGCAGAATTGAACAATGAACACGGAATGAGCCACGTATTTGGG 8361 Query 16314 GTTAAAAAAGGACCAGATTCTGTCGAGTTTGGGGAGCGCTGGTTAGATGACTTAGATTTT 16373 ||||||||||| || || ||||| ||| ||| ||| ||||| ||||| || |||||| Sbjct 8362 GTTAAAAAAGGCCCCGACTCTGTGCAGTATGGCGAGGAATGGTTGGATGATTTGGATTTT 8421 Query 16374 ATCTGTATAGACCCAAAACGGACACCAAATATCGCTCGAGAGTTTGAAAATATCGACTAT 16433 || ||||| |||||| | | || |||||||| || |||||||||||| || || ||| Sbjct 8422 ATTTGTATCGACCCACTAAGAACTCCAAATATAGCCAAAGAGTTTGAAAACATTGATTAT 8481 Query 16434 CAAGTCGATAGAGATGGCAACCCTAAACCTCGTTTAGAAGACAAGGATAACCATGCGATA 16493 || |||| ||||||||| ||||| || | | ||||| || |||||||| | || Sbjct 8482 CAGACGGATAAAGATGGCAATCCTAAGCCAAGGCTTGAAGATAAAGATAACCACACAATC 8541 Query 16494 GATGCGACAAGGTATGCT 16511 ||||| ||||| || ||| Sbjct 8542 GATGCAACAAGATACGCT 8559 Score = 131 bits (144), Expect = 4e-26 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 9278 TTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTC 9337 || || ||||| || ||||| | |||| | | |||||||| || ||||||| ||||| Sbjct 883 TTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTT 942 Query 9338 ATTAATTGTGTTATCTGGCGACAGTCTGCTGAAAATTTAGCCAACTGGGCTAAAAAAGGT 9397 || || ||||| || ||||| || ||||||||| | || || | || ||||| Sbjct 943 ATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGA 1002 Query 9398 GCTTTGATCGGAGTTACGGGTCGTATTCAGACACGTAACTACGAAAACCAACAAGGACAA 9457 | || | |||||| || | ||||| || ||||| || || ||||||||||| ||| Sbjct 1003 ACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGCCAA 1062 Query 9458 CGTGTCTATGTAACAGAAGTTGTTGCAGAGAACTTCCAAATGTTGGA 9504 ||||||||||| || ||||||||| |||| |||||| | || || Sbjct 1063 CGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGA 1109 >seq641 Length=27874 Score = 131 bits (144), Expect = 4e-26 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 9278 TTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTC 9337 || || ||||| || ||||| | |||| | | |||||||| || ||||||| ||||| Sbjct 26992 TTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTT 26933 Query 9338 ATTAATTGTGTTATCTGGCGACAGTCTGCTGAAAATTTAGCCAACTGGGCTAAAAAAGGT 9397 || || ||||| || ||||| || ||||||||| | || || | || ||||| Sbjct 26932 ATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGA 26873 Query 9398 GCTTTGATCGGAGTTACGGGTCGTATTCAGACACGTAACTACGAAAACCAACAAGGACAA 9457 | || | |||||| || | ||||| || ||||| || || ||||||||||| ||| Sbjct 26872 ACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGCCAA 26813 Query 9458 CGTGTCTATGTAACAGAAGTTGTTGCAGAGAACTTCCAAATGTTGGA 9504 ||||||||||| || ||||||||| |||| |||||| | || || Sbjct 26812 CGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGA 26766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121393567159632