Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_028775.1 Length=43098 Score E Sequences producing significant alignments: (Bits) Value seq641 201 3e-47 >seq641 Length=27874 Score = 201 bits (222), Expect = 3e-47 Identities = 564/856 (66%), Gaps = 11/856 (1%) Strand=Plus/Plus Query 37849 TAATTTCCAAACAGCAGCAACTTTATTATCTTTCGCTTTGCCGTAAGCAAATTGTTTTGC 37908 |||| |||| ||||| |||||||| || |||| ||||| || | |||||||||||||| Sbjct 15345 TAATGTCCATACAGCTGCAACTTTGTTGTCTTGTGCTTTACCAAACGCAAATTGTTTTGC 15404 Query 37909 AGTGTATAAATCCATATCATCTAACGCAAGTGTTTCTTTAAATT-TCTGAACATTAATAC 37967 |||| ||||| ||| ||||| || | ||||| | ||| | ||| || |||| | Sbjct 15405 AGTGAATAAACGACAATCTTCTAAAGCTAATGTTTGATCGTATTCTTTGATCACTAATGC 15464 Query 37968 CAC--CAGCTAAATAACCATCATATAAACCTTTAACGTACGTTAAAACCTTACCTGCTTC 38025 | |||| |||| |||| || ||| |||| | || ||| || || | || Sbjct 15465 TCCTGCAGC-AAATG--CATCGTAACGACCACTAACAAAAGTGGTAACTTTTCCAGATTT 15521 Query 38026 TTGGACTGTAGACTCGATAACATTCAAATTAAATGGTAAAGCAGTAACATATACGCCATT 38085 ||||| ||| || | || ||| ||| ||||| ||||| | | || | Sbjct 15522 TTGGAAATCAGATTCCACAATCCGCAATCCAAACGGTAATTTCGTAACCCAGTCCCCCAT 15581 Query 38086 TGCATTTAAATGTGTATACTGTGCTTGAACCTCAAAAGCATCGGACGGATTAACAACCAT 38145 |||||| | ||| ||| || || || || ||||| || || | |||| || Sbjct 15582 TGCATTACGAGAAGTAAACTCTGTTTCAATATCCAAAGCTTCATCTGGGCTCGCAACAAT 15641 Query 38146 TGTTACATTACCTTTAACCGCTACTGATTTACCTTTCTCGTTAGTTGAGTGGTATTTAAA 38205 ||| || || || | | ||| || || || ||| || ||||||||| Sbjct 15642 AACTACTTTCCCAGCGACAGAAATACGTTTGCCATTTTCTTTAACAGAATGGTATTTACG 15701 Query 38206 CACTTGCGTCAATTCATTAACTGTAGCGCGCGGATTAGCAAATGTAAGCGTACCTTGTTC 38265 || || | ||||| |||| | | || ||||| || | || ||| | | Sbjct 15702 CATTTCTTTTAATTCTTTAATCGCTGTTTTTTCATCGGCAAAAGTTAAAGTTCCTGCTGC 15761 Query 38266 TTCTTTCTCTGGATAAGCACCCTCA--GTTACCGATA-CACCTTTTTGTACTTGACGGTT 38322 ||||||||||||||||| | | || ||| || | || ||| || | ||| | Sbjct 15762 TTCTTTCTCTGGATAAGTAGTCACACCGTTTGAAGTAGCTCCCTTTGCTAAGTCACGAGT 15821 Query 38323 TAAGCCGATTGGTTGGTCTTTACCAGTACCTTTTAAGAACGCAGTTTC-AAGCGCCACTG 38381 ||| || || || | || || ||| || |||| ||| ||| ||| |||| | || | Sbjct 15822 TAAACCAATAGGCTTATCGTTTCCATCGCCATTTAGGAAAGCATCTTCGAAGC-CAACAG 15880 Query 38382 CAAATGCTTCTTCGATTTGAACACGAACAAATCTTTCAATCCACGCAGGACCAAAATCAT 38441 ||||||| |||| |||||| | ||| | | || |||||| |||||||| | || Sbjct 15881 CAAATGCCTCTTTAATTTGAGTAGTTACATAACGTTTAATCCAAACAGGACCATATTCTA 15940 Query 38442 TTAAATCTTTTGGTAAAACAACAAACGCTGTCAATTTATTTTGAATTGCTGTTTCTTCAC 38501 || ||| |||||||| || ||||| ||||| ||| |||| |||| ||||| | Sbjct 15941 ATAGATCGTTTGGTAATACTACAAATGCTGTTGCTTTGCTTTGTTTTGCATCGTCTTCGC 16000 Query 38502 TGAACGCAGCATCTAATTGACCTTTAATTTCACCATAGATTTTACCCCAAACGGCTACGC 38561 |||| | |||||||| |||||||||||||| || | |||||||||||||| | | Sbjct 16001 TGAAGGTTGCATCTAACTGACCTTTAATTTCGCCGAAAATTTTACCCCAAACAATGGCAC 16060 Query 38562 CAGAAGTTTCAGATTTTAAGAACTTCAAACGCAAACCAGCGTTTTTAATACCTAAATCAG 38621 | | ||||||||||||| ||||| || ||||| | || || | ||||| || Sbjct 16061 CTTTTGGATCAGATTTTAAGATTTTCAAGCGTAAACCTGTGTACTTTAAGCCTAATTCTT 16120 Query 38622 CTAATAACGGATGATTCGTCGTCAAATCTTCAAAAATTCTATCAATTGTTTCTTCTGGCA 38681 |||||| ||| | | | || ||||| | ||||||| ||| | |||| ||| || | Sbjct 16121 TTAATAATGGACGTTCTCTTGTTAAATCATTAAAAATTTCATCCACTGTTGTTTCAGGAA 16180 Query 38682 AAAGTTTTTCTTCTTT 38697 |||| ||| ||||| Sbjct 16181 GTAGTTCTTCATCTTT 16196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137782882647840