Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_028830.1 Length=34155 Score E Sequences producing significant alignments: (Bits) Value seq5340 145 2e-30 >seq5340 Length=1013 Score = 145 bits (160), Expect = 2e-30 Identities = 230/326 (71%), Gaps = 8/326 (2%) Strand=Plus/Minus Query 25018 AAAGGAGG--AATCCAAATGAATGGGTTAGTGATCATGCATGAGCAACAGGCAGTTACTA 25075 |||||| | || | ||||||| ||||| || ||| | || |||| || || || | Sbjct 529 AAAGGAAGGAAAACAAAATGAACAATTTAGTAATTATGAAAGACAAACAAGCGGTAACAA 470 Query 25076 CGAGCCTGAAGGTTGCTGAAGTTTTCGGTAAGGAGCACAAAGTTGTGCTTCGTGCAATCG 25135 || ||| | ||||||||||| |||| |||| | ||||||| ||| | ||||| | Sbjct 469 GTAGTCTGCAAGTTGCTGAAGTATTCGATAAGCAACACAAAGATGTATTAGAGGCAATTG 410 Query 25136 AGGACAAAATTCAATCGGCACAAAATTATGCCGATTACAAAAAGATGTTCG---AGGCAA 25192 | |||||||||||||| |||||| || ||||| ||| ||||| | ||| | Sbjct 409 ATACGAAAATTCAATCGGCGGAAAATTCCGCTCATTACCAAATCATGTTTGCTGAGGGA- 351 Query 25193 GCACCTATACCGACTCGCGAGGCCGAGAACAAAAGGTCTATTTCATGAATCGTGATGGAT 25252 | | || | || || |||| || | |||| | |||| ||||||||||||||| | Sbjct 350 GAA--TACAAAGATTCAAGAGGTAGAAAGCAAAGATTGTATTACATGAATCGTGATGGCT 293 Query 25253 TTACGTTCATTGCGTTTGGTTTCACCGGGAAGGCTGCAGATCAATTCAAGCTGAAATACA 25312 || | || ||||| ||||| ||||| || || |||||| |||||| |||||||| | Sbjct 292 TTTCTTTTATTGCATTTGGATTCACAGGCAAAAAAGCAGATACATTCAAACTGAAATATA 233 Query 25313 TCTCAGCATTTAACGCAATGGAAAAA 25338 | ||| ||||| |||||||||| Sbjct 232 TTGAAGCTTTTAATCTAATGGAAAAA 207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109167176202888