Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_028984.1 Length=30664 Score E Sequences producing significant alignments: (Bits) Value seq884 147 4e-31 seq641 147 4e-31 >seq884 Length=19560 Score = 147 bits (162), Expect = 4e-31 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 27872 TGCAAACTTTACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGC 27931 || || |||||| ||||| || |||||||| |||| ||| ||||| || ||||| ||||| Sbjct 876 TGGAAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGC 935 Query 27932 TGATTTCATTAATATCGTGATTTGGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAA 27991 ||||| || || || ||||||||| ||| ||||||| | ||||| | || Sbjct 936 GGATTTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCG 995 Query 27992 AAAAGGGACTCTTTTAGGCATTACTGGTCGAATTCAGACCCGCAATTATGAAAACCAACA 28051 ||||| || | ||||| || ||| ||||||| || || |||||||| |||||||| Sbjct 996 TAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACA 1055 Query 28052 AGGTCAGCGTGTTTACGTCACAGAAGTTGTTGCGGATAATTTCCAAATTTTGGA 28105 ||| || ||||| || || || ||||||||| || | ||||||| | || || Sbjct 1056 AGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGA 1109 >seq641 Length=27874 Score = 147 bits (162), Expect = 4e-31 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 27872 TGCAAACTTTACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGC 27931 || || |||||| ||||| || |||||||| |||| ||| ||||| || ||||| ||||| Sbjct 26999 TGGAAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGC 26940 Query 27932 TGATTTCATTAATATCGTGATTTGGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAA 27991 ||||| || || || ||||||||| ||| ||||||| | ||||| | || Sbjct 26939 GGATTTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCG 26880 Query 27992 AAAAGGGACTCTTTTAGGCATTACTGGTCGAATTCAGACCCGCAATTATGAAAACCAACA 28051 ||||| || | ||||| || ||| ||||||| || || |||||||| |||||||| Sbjct 26879 TAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACA 26820 Query 28052 AGGTCAGCGTGTTTACGTCACAGAAGTTGTTGCGGATAATTTCCAAATTTTGGA 28105 ||| || ||||| || || || ||||||||| || | ||||||| | || || Sbjct 26819 AGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGA 26766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97996715373264