Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_029026.1 Length=130952 Score E Sequences producing significant alignments: (Bits) Value seq884 170 2e-37 >seq884 Length=19560 Score = 170 bits (188), Expect = 2e-37 Identities = 172/221 (78%), Gaps = 7/221 (3%) Strand=Plus/Plus Query 15490 GGAGGGAGTACAATGATTAAATTTAAAGAATTTGATGTTGGGGATATACATTACGAAGAA 15549 |||||||| | ||||||||| ||||||||||||||||| || ||||| || || |||||| Sbjct 3383 GGAGGGAGCAGAATGATTAAGTTTAAAGAATTTGATGTCGGTGATATTCACTATGAAGAA 3442 Query 15550 CAACTAGAAAAATTTCAAAATGAGCACCCAAGCGCCGAATTTGTAACAATCACAGGCGGA 15609 ||| ||||| |||||||||| || |||| || || |||||| || ||| ||||| || Sbjct 3443 CAAATAGAACAATTTCAAAAGGAACACCAAAATGCTGAATTTATACAAATTACAGGTGGG 3502 Query 15610 CAAACAACATATGAGAAAATTTGGTTCAAATACACTGATGATAAGGTA--GCCCAAGTAG 15667 | ||| | ||||| ||||||||||||||||| ||||||| |||| | ||| || Sbjct 3503 TATACATCCTATGAAAAAATTTGGTTCAAATA---TGATGAT--GGTATTGAACAACCAG 3557 Query 15668 AGCTAAGTGATAATCAACAAATTGTTTTGGGTTGGTTAAAA 15708 | || | || ||||| || ||||| ||| |||||| ||| Sbjct 3558 AACTCAACGAAAATCAGCAGATTGTGCTGGATTGGTTGAAA 3598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418893151557796