Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_029058.1 Length=106071 Score E Sequences producing significant alignments: (Bits) Value seq1321 141 6e-29 >seq1321 Length=4872 Score = 141 bits (156), Expect = 6e-29 Identities = 205/285 (72%), Gaps = 11/285 (4%) Strand=Plus/Plus Query 37841 ATTGCTAATCAGTACCCGTTATGGTTGGCCGAATATCCAAATTATCAAGTGACAACCGAA 37900 ||||| || |||| | |||||| |||| ||||||||| ||||| |||||||| | | Sbjct 2377 ATTGCAAAGAAGTATCAATTATGGATGGCAGAATATCCAGATTATGAAGTGACACCTTAT 2436 Query 37901 CCAAATTACAACTTCTTCCCGTCCTTTGATAACGTGCAGATGTTACAATTCACGTCAACT 37960 ||||||||||| | || || || ||||| || | || || || ||||||||||| Sbjct 2437 CCAAATTACAATTATTTTCCTTCATTTGAAAATATCGGTATTTTTCAGTTCACGTCAACC 2496 Query 37961 TATATTGCTGGTGGGCTTGATGGAAATGTAGACTTCACCGGTATTACCGAGAATGGTTAT 38020 || |||| || ||||| ||||| || || || || || |||||||| || ||||||||| Sbjct 2497 TACGTTGCAGGAGGGCTAGATGGTAACGTTGATTTAACAGGTATTACTGATAATGGTTAT 2556 Query 38021 AAGAACGGGAATGCTCAACGGCCAGCAACTAAGACACCGGCAACTGAAACTGGTCAACAA 38080 | || |||| ||| |||||||| || ||||| |||| ||| | || || || Sbjct 2557 ACAAA---GAATAACCAA---CCAGCAACAAACACACCAGCAATTGATGCAGGGGAAAAA 2610 Query 38081 CTGCACCAAGATACACACAGTTATAATGTTAAGAGT-GGTGATAC 38124 | | || |||| | |||| ||||||| ||| || ||||| Sbjct 2611 GT---CGAAAATACGCCAAGTTCCGATGTTAA-AGTCGGCGATAC 2651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339279358398144