Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq10 114 9e-21 seq48 104 2e-17 seq558 82.4 5e-11 >seq10 Length=3877145 Score = 114 bits (126), Expect = 9e-21 Identities = 167/234 (71%), Gaps = 14/234 (6%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || ||||| | || || ||| ||||| | || || ||| | Sbjct 2844818 ATGCAAATCTTCGTTAAAACATTGACGGGAAAAACAATTACTCTGGAGGTTGAACCTTCT 2844877 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||||| || ||| |||||| |||||||| ||| |||| | Sbjct 2844878 GA-----TACAATCGAAAACGTTAAAGCAAAAATTCAAGACAAAGAGGGTATTCCCCCAG 2844932 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| |||||||| || || || |||||||| |||| ||||| |||||||| | Sbjct 2844933 ATCAACAACGTTTAATTTTCGCTGGCAAGCAATTGGAGGACGGACGCACATTGTCCGACT 2844992 Query 27965 ACAACATCCAAAAAGAG--AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| | ||||| || ||||| |||||| | ||||| || Sbjct 2844993 ACAACATCCAAAAGGAGTCAACACTT--CACTTGGTATTGCGTCTCCGTGGTGG 2845044 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || ||||| || |||||||| ||| |||||| | || |||||| || Sbjct 2845274 ATGCAAATCTTCGTGAAGACCCTTACTGGTAAAACTATTACTTTGGAGGTCGAACCATCC 2845333 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | || || || || || || || || || | || || || Sbjct 2845334 GACACCATCGAAAACGTTAAGGCTAAGATCCAAGATAAGGAGGGAATCCCACCAGATCAA 2845393 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || |||||||| ||||||||||| |||| ||| | ||||||||||||||| Sbjct 2845394 CAACGTTTGATCTTTGCCGGTAAACAATTGGAGGACGGACGTACTTTGTCCGATTACAAC 2845453 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || || | |||||||| |||||| | ||||| ||| Sbjct 2845454 ATCCAAAAGGAATCAACCCTTCATTTGGTATTGCGTCTCCGTGGTGGC 2845501 Score = 107 bits (118), Expect = 1e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| | || || || ||||| ||||| |||||||| |||||| |||| Sbjct 2844455 GACAAAGAAGGAATCCCCCCAGATCAACAACGTTTAATCTTTGCCGGTAAACAACTGGAA 2844514 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | ||||||||||||||||||||| || ||| || | ||||||||| | Sbjct 2844515 GACGGACGTACCTTGTCCGATTACAACATCCAGAAGGAGTCTACACTTCATTTGGTTCTT 2844574 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 2844575 CGTCTACGTGGTGG 2844588 Score = 96.9 bits (106), Expect = 2e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||||| || || |||||||| ||||||||||| |||| ||||| | |||| || Sbjct 2845160 GATCAACAACGTTTGATCTTTGCCGGTAAACAATTGGAGGACGGACGCACCCTGTCGGAC 2845219 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| |||||||| || ||| | |||||||| |||||| | ||||| || Sbjct 2845220 TACAATATCCAAAAGGAATCAACTCTTCATTTGGTATTGCGTCTCCGTGGTGG 2845272 >seq48 Length=1730007 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 |||||| ||||| |||||||| ||| | || || || || || || || || Sbjct 776747 GTCAAAGCTAAAATTCAAGACAAAGAGGGTATCCCACCAGATCAACAGCGTTTGATCTTC 776806 Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984 ||||||||||||||||| || | |||| ||||||||| |||||||||||||| ||| Sbjct 776807 GCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAACATCCAAAAGGAGTCA 776866 Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || | |||||||| |||||| | ||||| || Sbjct 776867 ACCCTCCATTTGGTGTTGCGTCTTCGTGGTGG 776898 >seq558 Length=79715 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || ||||| ||||| || ||| || || |||| || ||| | Sbjct 66181 AATGCAAATTTTCGTAAAAACCCTTACGGGTAAAACCATCACTCTTGAGGTTGAACCTTC 66240 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 || | | || || ||| ||||| || || ||||| |||| || || Sbjct 66241 GGATACTATCGAACATGTTAAAGCCAAAATCCAAGATAAGGAAGGGATTCCACCAGATCA 66300 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 || || |||||||||||||||||||||||||| || | |||| ||| | || ||||| Sbjct 66301 ACAGCGTTTAATTTTTGCCGGAAAACAATTGGAGGATGGTCGCACATTGGCAGACTACAA 66360 Query 27969 CATCCAAAAAGAG 27981 ||| || || ||| Sbjct 66361 CATTCAGAAGGAG 66373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355838233829244