Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq10 134 3e-26 seq48 111 4e-19 >seq10 Length=3877145 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || ||||| ||||||||||| || || | | || | ||| || |||| || Sbjct 2845021 GTGAAGTGTTGACTCCTTTTGGATGTTGTAGTCGGACAATGTGCGTCCGTCCTCCAATTG 2844962 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||| ||||| || | |||||||| || || |||| || || ||||| || || || Sbjct 2844961 CTTGCCAGCGAAAATTAAACGTTGTTGATCTGGGGGAATACCCTCTTTGTCTTGAATTTT 2844902 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 | ||| ||||||||||| || ||||| ||||||||| ||||| || || |||||||| Sbjct 2844901 TGCTTTAACGTTTTCGATTGTATCAGAAGGTTCAACCTCCAGAGTAATTGTTTTTCCCGT 2844842 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | || || || || | ||||| Sbjct 2844841 CAATGTTTTAACGAAGATTTGCAT 2844818 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || || || ||||||||||| ||||| | | || | ||| || |||| || Sbjct 2845476 TGAAGGGTTGATTCCTTTTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCCAATTGT 2845417 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| | |||||||| || || || | ||| ||||| || |||||||| Sbjct 2845416 TTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTATCTTGGATCTTA 2845357 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || ||||||||||||||||| || ||| ||||| | ||| || || || || || Sbjct 2845356 GCCTTAACGTTTTCGATGGTGTCGGATGGTTCGACCTCCAAAGTAATAGTTTTACCAGTA 2845297 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | ||||| Sbjct 2845296 AGGGTCTTCACGAAGATTTGCAT 2845274 >seq48 Length=1730007 Score = 111 bits (122), Expect = 4e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || ||||| ||||||||||| || || | | ||| | |||||||||| || Sbjct 776874 TGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCCAATTGT 776815 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| | || ||||| || || || | || || ||||| || || || Sbjct 776814 TTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATACCCTCTTTGTCTTGAATTTTA 776755 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || ||||||||||||||||| || ||||| | ||||| ||||| || || Sbjct 776754 GCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCTAAGGTGATGGTCTTACCAGTT 776695 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 | || || || || | ||||||| Sbjct 776694 AATGTTTTGACGAAAATCTGCATT 776671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159069246689780