Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq558 167 2e-36 seq10 163 2e-35 seq48 132 3e-26 >seq558 Length=79715 Score = 167 bits (184), Expect = 2e-36 Identities = 165/211 (78%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| |||||||| ||||| ||||| |||||||| || ||||| | | Sbjct 66181 AATGCAAATTTTCGTAAAAACCCTTACGGGTAAAACCATCACTCTTGAGGTTGAACCTTC 66240 Query 23670 GGACACTGTTGAA-ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| ||| | ||| || ||||| | |||| | || || ||||| | || ||||||| Sbjct 66241 GGATACTATCGAACATGTTAAAGCCAAAA-TCCAAGATAAGGAAGGGATTCCACCAGATC 66299 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||||||||||| |||||||| |||||| |||| || | ||||| || | || |||| Sbjct 66300 AACAGCGTTTAATTTTTGCCGGAAAACAATTGGAGGATGGTCGCACATTGGCAGACTACA 66359 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||| || || ||||| |||||||| ||||| Sbjct 66360 ACATTCAGAAGGAGTCTACATTACACTTAGT 66390 >seq10 Length=3877145 Score = 163 bits (180), Expect = 2e-35 Identities = 166/214 (78%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| || ||| | || || || || |||||||| || ||||| | Sbjct 2844359 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 2844418 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || ||| |||||| | ||||| | || | || ||||||||||| | || ||||| Sbjct 2844419 TCCGATACTATTGAAAATGTTAAAGCTAAGA-TTCAGGACAAAGAAGGAATCCCCCCAGA 2844477 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| |||||||| |||||||| |||||||||||||||| ||| || || |||||| Sbjct 2844478 TCAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGTACCTTGTCCGATTA 2844537 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||||| || || ||||| ||| | ||||| ||| Sbjct 2844538 CAACATCCAGAAGGAGTCTACACTTCATTTGGTT 2844571 Score = 149 bits (164), Expect = 4e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||||||||| | ||||||||||| || ||||| || ||||| | | Sbjct 2844818 ATGCAAATCTTCGTTAAAACATTGACGGGAAAAACAATTACTCTGGAGGTTGAACCTTCT 2844877 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | ||| ||||||| |||||||| ||| | || ||||||||| Sbjct 2844878 GATACAATCGAAAACGTTAAAGCAAAAATTCAAGACAAAGAGGGTATTCCCCCAGATCAA 2844937 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || |||||||| || || ||||| ||| |||| |||| |||||| || ||| |||||| Sbjct 2844938 CAACGTTTAATTTTCGCTGGCAAGCAATTGGAGGACGGACGCACATTGTCCGACTACAAC 2844997 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || ||||| ||||| ||| | || || || || Sbjct 2844998 ATCCAAAAGGAGTCAACACTTCACTTGGTATT 2845029 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| | ||||||||||| |||||| | || ||||| | | Sbjct 2844590 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 2844649 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | ||| | |||||| || || ||||| | || |||||||| Sbjct 2844650 GATACTATTGAGAATGTCAAAGC-TAAAATTCAAGATAAGGAAGGAATCCCACCAGATCA 2844708 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || || || |||||||| |||| || | |||||| | ||| || || Sbjct 2844709 ACAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAA 2844768 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || |||||||||||||||||| || | || || || || Sbjct 2844769 TATTCAGAAGGAATCCACATTACATTTAGTTCTACGCTTACGTGGTGG 2844816 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || ||||| || ||| | || || || | | Sbjct 2845274 ATGCAAATCTTCGTGAAGACCCTTACTGGTAAAACTATTACTTTGGAGGTCGAACCATCC 2845333 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || || || || || | || ||||||||| Sbjct 2845334 GACACCATCGAAAACGTTAAGGCTAAGATCCAAGATAAGGAGGGAATCCCACCAGATCAA 2845393 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || |||||||| |||||| |||| |||| ||| ||||| |||||||||| Sbjct 2845394 CAACGTTTGATCTTTGCCGGTAAACAATTGGAGGACGGACGTACTTTGTCCGATTACAAC 2845453 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || ||||| || || || | ||||| || || Sbjct 2845454 ATCCAAAAGGAATCAACCCTTCATTTGGTATT 2845485 Score = 102 bits (112), Expect = 6e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||||| || || ||||| || || | |||||||| | | Sbjct 2845046 ATGCAAATCTTTGTGAAGACCCTGACCGGTAAAACCATAACCTTGGAAGTTGAGCCTTCC 2845105 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| |||| | |||| | || || || || | || |||||||| Sbjct 2845106 GATACTATTGAGAATGTTAAGGCCAAAA-TCCAAGATAAGGAGGGCATTCCACCAGATCA 2845164 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || |||||||| |||||| |||| |||| |||||| | || ||||| Sbjct 2845165 ACAACGTTTGATCTTTGCCGGTAAACAATTGGAGGACGGACGCACCCTGTCGGACTACAA 2845224 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || ||||| || || || | ||||| || || Sbjct 2845225 TATCCAAAAGGAATCAACTCTTCATTTGGTATT 2845257 >seq48 Length=1730007 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| ||||| | || || || || ||||| | || || || | | Sbjct 776671 AATGCAGATTTTCGTCAAAACATTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCATC 776730 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | ||| |||||| |||||||| ||| | || |||||||| Sbjct 776731 TGACACCATCGAAAATGTCAAAGCTAAAATTCAAGACAAAGAGGGTATCCCACCAGATCA 776790 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || || ||||| |||||| ||||||| | ||||| || ||| ||||| Sbjct 776791 ACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAA 776850 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| ||||| ||||| || | ||||| || || Sbjct 776851 CATCCAAAAGGAGTCAACCCTCCATTTGGTGTT 776883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337986646190576