Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq48 131 4e-25 seq10 114 3e-20 seq5572 91.5 4e-13 >seq48 Length=1730007 Score = 131 bits (144), Expect = 4e-25 Identities = 165/224 (74%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||||| || || || ||||||| ||||| |||| ||| || Sbjct 776893 ACGAAGACGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGT 776834 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || || |||||||| | || ||||| || || || ||||| Sbjct 776833 GCGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATACC 776774 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 || |||||||| || ||| |||| ||| |||||||||||| || | || || |||| Sbjct 776773 CTCTTTGTCTTGAAT-TTTAGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCTA 776715 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 | ||||| ||||| || || || ||||| | ||| | |||||| Sbjct 776714 AGGTGATGGTCTTACCAGTTAATGTTTTGACGAAAATCTGCATT 776671 >seq10 Length=3877145 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || ||||| ||||||| |||||||||| |||||| | || || || | || Sbjct 2845476 TGAAGGGTTGATTCCTTTTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCCAATTGT 2845417 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| | |||||||| || || || || || ||||| ||||||||||| Sbjct 2845416 TTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTATCTTGGATCTTA 2845357 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || |||||||||||| || | ||| || || || || || || || || || Sbjct 2845356 GCCTTAACGTTTTCGATGGTGTCGGATGGTTCGACCTCCAAAGTAATAGTTTTACCAGTA 2845297 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | || || | ||| | |||||| Sbjct 2845296 AGGGTCTTCACGAAGATTTGCAT 2845274 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||||| || ||||| || || | |||||| |||| |||||| Sbjct 2847107 CGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTA 2847048 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| || |||||||| | ||| ||||| || || |||||||| Sbjct 2847047 CGTCCATCCTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGATCTGGTGGAATACCC 2846988 Query 225613 TCCTTGTCTTGGATCTT 225629 ||||| ||||||||||| Sbjct 2846987 TCCTTATCTTGGATCTT 2846971 Score = 107 bits (118), Expect = 5e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 |||||||| || || | ||| || |||| || || | ||||| || | ||| || ||| Sbjct 2844786 GTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCCAACTGTTTGCCA 2844727 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || | |||||||| || || || || |||||||| ||||| || ||| |||| Sbjct 2844726 GCGAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGAAT-TTTAGCTTT 2844668 Query 225637 -ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| || || || || || | || || || || ||||| || || ||||||||||| Sbjct 2844667 GACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGTCAAAGT 2844608 Query 225696 TTTTATGAACACTTGCAT 225713 ||| | ||| | ||||| Sbjct 2844607 TTTGACGAAAATCTGCAT 2844590 >seq5572 Length=15825 Score = 91.5 bits (100), Expect = 4e-13 Identities = 126/175 (72%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| | || || || || | || || ||||| |||||||||||||| || | || || Sbjct 1580 CAAATCTATAATGTCATCGTAACAGCTCATGCATTTGTTATGATTTTTTTCATAGTGATA 1639 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||| | || || |||| | || || || ||| Sbjct 1640 CCTATTATAATTGGAGGATTTGGAAATTGACTAGTACCCCTAATACTAGGAGCGCCAGAT 1699 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC-CTTA 7725 || || || || | | || |||||||| ||||||||| |||| || || |||| Sbjct 1700 ATAGCATTCCCTCGAATGAATAATATAAGATTTTGATTATTACCCCCCTCTCTTA 1754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192446063706968