Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq7 262 3e-65 >seq7 Length=4380649 Score = 262 bits (290), Expect = 3e-65 Identities = 492/715 (69%), Gaps = 20/715 (3%) Strand=Plus/Plus Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 ||| || ||||| |||||||||||||| | | ||| || ||| || || |||||||| Sbjct 4094564 CAAGCGATCAGCCACAAATTCTATATAATCGGACATTGATTTGCAATTCATACCAATTAA 4094623 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | || || | |||| || || || ||||| || || | || ||||| | || || Sbjct 4094624 ATTTACGGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTAACAGCTTCGGAAATGAT 4094683 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAA 4555 || | ||| || ||| ||| || | || || | | ||||| ||||| || || Sbjct 4094684 TTCAATAATTCGTTCATTACTTGGCTTCTGTATCAAATGTTGAAACATCAAACATGCGAA 4094743 Query 4556 ATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCAT 4615 ||||||||||| ||| ||||||| || || || || ||||||||||| || ||||| Sbjct 4094744 ATCACAATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAAAACGTTAAGCCAGGCAT 4094803 Query 4616 TAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAA--TGACCCAGAAAAGAATATGCCT 4673 |||||| | ||||||||||| || || | ||||| | | | ||||| |||| ||| Sbjct 4094804 TAAACCACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCACTGAAAAAAATA--CCT 4094861 Query 4674 TCTACGGCGGCAAACGCTACTAATCG-GGACCCGAACGAGCTGGCTTTGTCTTTAATCCA 4732 || || || ||||| || | || || ||| | || | ||||| |||||| Sbjct 4094862 TCCACAGCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCGACTTTG-AGGAAATCCA 4094920 Query 4733 TTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA- 4791 | |||||| | || || ||| ||| || || || | ||||| || |||| Sbjct 4094921 AGCAAGTGCCCAATCTGCCTTACGCTTTACGGCAGGCATCGTTTCAATAGCATTGAATAA 4094980 Query 4792 --ATTTACTTT-TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTT 4848 | || |||| |||| || || | |||||| || || |||| || |||||||||| Sbjct 4094981 ATAGTTCCTTTGTTTCGAA----TCCTTAATATATGTATCGATTAATATACTATACATTT 4095036 Query 4849 CAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTT 4908 | ||||| | || || |||||||| |||||||| || || || | || ||||| |||| Sbjct 4095037 CGGAATGCACGTTCTCCATAGCAATTTGAAATCCATAGAAACAACGTGCCTCTGTAACTT 4095096 Query 4909 GAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAA 4968 | || || | || |||| ||| ||||| || || || || ||||| ||| || |||| Sbjct 4095097 GGACCTCCTGACTGAATCGTTCAACTAAATTCTCATTAACAATACCATCAGATGCGGCAA 4095156 Query 4969 AAAACGCCAAAACATGAGATATAAAGTACTGTTC---GTCAGGCTTAAGTTTTTTCCAGT 5025 |||| || || || || || || || | | |||| ||||| | || | ||| | Sbjct 4095157 AAAAGGCTAATACGTGTGAGATGAAATGCCGTTCATTGTCAG---TGAGACGTGCCCAAT 4095213 Query 5026 GGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 || |||||||| | ||| ||||| ||||| ||||||||||||||||| || Sbjct 4095214 CATCCATATCTTTAGAAAGATCCACTTCCTCAACTGTCCAAAACGACGCTTCTGC 4095268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427020599595476