Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_031013.1 Length=34396 Score E Sequences producing significant alignments: (Bits) Value seq273 147 5e-31 >seq273 Length=32108 Score = 147 bits (162), Expect = 5e-31 Identities = 233/329 (71%), Gaps = 4/329 (1%) Strand=Plus/Minus Query 3796 GCATTATCAGCTAATGAAGAAACTAACCAACGACTAGATGTTGTTGAGGAAGAGATTCAT 3855 || |||||||| ||||||||||| || | || ||||| | |||| || |||| | Sbjct 28236 GCTTTATCAGCAAATGAAGAAACAAATGAGCGTGTAGATAATATTGATAAAC-GATTAGT 28178 Query 3856 -GAAATTAAAGAAAATAAATTGATTACAACTGAGGATAAAGGAACTATTGATTCTCACGT 3914 || || ||||||||||| |||||| ||||| |||||||| || || ||| || Sbjct 28177 AGATATCGAAGAAAATAAACTGATTAGCACTGAAGATAAAGGGACGATCGATAGCAGAGT 28118 Query 3915 TCGCAAAAAAGTAG-CAAGTATTTGTCGAGAGCAACGCCTTGACCAACAAGCGAAAAGTT 3973 | | || ||||| | | | | || ||| |||||| | ||| |||| ||| Sbjct 28117 TAGAAAGAAAGTGTACTACT-TATGCAAAGAACAACGCTTAAGTCAAGAAGCAAAATCAA 28059 Query 3974 TACTTTTTCAGGATTTAGGCTCAAGCATTAAACGGTTGTTCAATGTGCCTAATAGAGGGC 4033 | || ||||| ||||| || || ||||| ||||| |||| ||||| ||||||||||| | Sbjct 28058 TGCTCTTTCAAGATTTGGGATCTAGCATAAAACGACTGTTTAATGTTCCTAATAGAGGTC 27999 Query 4034 GAATTAAAGATAAAGACTTCATGAAAGTTCTTGATTTCGTTGATACATGGGAGCCGTCAT 4093 | ||||| ||||| || ||| |||||||| || |||||| ||| ||||||||| Sbjct 27998 GCATTAAGGATAAGGATTTCCAACGTGTTCTTGAATTTATTGATAACTGGCAGCCGTCAT 27939 Query 4094 CAGTAACGAAAGCGCAAATTCATCAACTT 4122 | || || |||| || ||| | || ||| Sbjct 27938 CTGTTACTAAAGAACAGATTAAACAGCTT 27910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109938325174512